- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 9 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 12 residues within 4Å:- Chain A: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.1, ZN.2, GOL.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.114
- Water bridges: A:Y.216
- Salt bridges: A:H.113, A:H.116, A:H.191
PO4.7: 12 residues within 4Å:- Chain B: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.5, ZN.6, GOL.8
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:N.114
- Water bridges: B:N.114, B:Y.216, B:Y.216, B:Y.216
- Salt bridges: B:H.113, B:H.116, B:H.191, B:H.259
PO4.13: 12 residues within 4Å:- Chain C: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.11, ZN.12, GOL.14
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.114, C:Y.216
- Water bridges: C:N.114, C:Y.216
- Salt bridges: C:H.113, C:H.116, C:H.191
PO4.17: 12 residues within 4Å:- Chain D: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.15, ZN.16, GOL.19
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:N.114, D:D.115, D:Y.216
- Water bridges: D:Y.216
- Salt bridges: D:H.113, D:H.116, D:H.191
PO4.18: 4 residues within 4Å:- Chain D: H.243, Q.246, Y.247, R.251
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:Q.246, D:Q.246, D:Q.246
- Water bridges: D:R.251
- Salt bridges: D:R.251
PO4.22: 12 residues within 4Å:- Chain E: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.20, ZN.21, GOL.24
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:N.114
- Water bridges: E:Y.216
- Salt bridges: E:H.113, E:H.116, E:H.191
PO4.23: 5 residues within 4Å:- Chain E: H.243, Q.246, Y.247, S.250, R.251
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Q.246, E:Q.246, E:S.250
- Salt bridges: E:R.251
PO4.28: 12 residues within 4Å:- Chain F: H.111, H.113, N.114, D.115, H.116, H.191, D.213, Y.216, H.259
- Ligands: ZN.26, ZN.27, GOL.30
7 PLIP interactions:7 interactions with chain F- Hydrogen bonds: F:N.114, F:D.115, F:Y.216, F:Y.216
- Salt bridges: F:H.113, F:H.116, F:H.191
PO4.29: 5 residues within 4Å:- Chain F: H.243, Q.246, Y.247, S.250, R.251
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:Q.246, F:S.250
- Salt bridges: F:H.243, F:R.251
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 7 residues within 4Å:- Chain A: I.13, I.41, A.80, N.114, D.115, H.259
- Ligands: PO4.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.114
GOL.8: 8 residues within 4Å:- Chain B: I.13, V.15, I.41, N.114, D.115, H.259
- Ligands: ZN.5, PO4.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.114
GOL.9: 4 residues within 4Å:- Chain B: F.208, S.266, L.267, Y.275
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.266, B:S.266
GOL.10: 1 residues within 4Å:- Chain B: I.83
No protein-ligand interaction detected (PLIP)GOL.14: 8 residues within 4Å:- Chain C: I.13, V.15, I.41, N.114, D.115, H.259
- Ligands: ZN.11, PO4.13
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.114
GOL.19: 7 residues within 4Å:- Chain D: I.13, V.15, I.41, N.114, D.115, H.259
- Ligands: PO4.17
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.114, D:H.259
GOL.24: 9 residues within 4Å:- Chain E: I.13, V.15, I.41, N.114, D.115, Y.216, H.259
- Ligands: ZN.20, PO4.22
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.114, E:Y.216
GOL.25: 5 residues within 4Å:- Chain D: F.135, L.168
- Chain E: A.136, T.137, R.140
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:A.136, E:R.140
- Water bridges: D:L.168
GOL.30: 11 residues within 4Å:- Chain F: I.13, V.15, I.20, I.41, A.80, N.114, D.115, Y.216, H.259
- Ligands: ZN.26, PO4.28
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:N.114
- Water bridges: F:Y.216
GOL.31: 6 residues within 4Å:- Chain E: D.233, I.235
- Chain F: T.189, D.233, I.235, G.236
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:G.236
- Water bridges: F:R.239, E:G.236
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens. Biochemistry (2007)
- Release Date
- 2007-10-09
- Peptides
- Zn-dependent hydrolases: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
AC
DD
EE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 9 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, D. et al., Structure and specificity of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens. Biochemistry (2007)
- Release Date
- 2007-10-09
- Peptides
- Zn-dependent hydrolases: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
AC
DD
EE
BF
C