SMTL ID : 2r2l.1

Structure of Farnesyl Protein Transferase bound to PB-93

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.275, C.277, Y.339, H.340 Ligands: PB9.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.275, B:D.275, B:C.277, B:H.340

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 14 residues within 4Å: Chain A: K.111, Y.113 Chain B: W.80, R.180, Y.183, H.226, G.228, Y.229, C.232, R.269, K.272, Y.278, W.281 Ligands: PB9.3 19 PLIP interactions: 15 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:W.80, B:Y.183, B:Y.229, B:W.281 Water bridges: B:R.269, B:R.269, B:K.272, B:K.272, B:L.273, B:Y.278, A:K.111, A:K.145, A:K.145 Salt bridges: B:H.226, B:R.269, B:R.269, B:K.272, B:K.272, A:K.111

1 x PB9: methyl 4-{[{(3S)-6-cyano-1-[(1-methyl-1H-imidazol-5-yl)methyl]-1,2,3,4-tetrahydroquinolin-3-yl}(pyridin-2-ylsulfonyl)amino]methyl}piperidine-1-carboxylate(Non-covalent)

PB9.3: 19 residues within 4Å: Chain A: Y.78 Chain B: Y.71, L.74, A.76, S.77, W.80, W.84, H.127, A.129, P.130, R.180, D.275, C.277, D.337, F.338, Y.339, H.340 Ligands: ZN.1, FPP.2 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.74, B:W.84, B:Y.339, B:Y.339 Hydrogen bonds: B:Y.71, B:F.338, B:Y.339, B:Y.339 pi-Stacking: B:Y.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Van Voorhis, W.C. et al., Efficacy, pharmacokinetics, and metabolism of tetrahydroquinoline inhibitors of Plasmodium falciparum protein farnesyltransferase. Antimicrob.Agents Chemother. (2007)

Release Date

2008-03-11

Peptides

Farnesyltransferase subunit alpha: A
Farnesyltransferase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Farnesyltransferase subunit alpha

Farnesyltransferase subunit beta

Related Entries With Identical Sequence