SMTL ID : 2r3b.1

CRYSTAL STRUCTURE OF a ribokinase-like superfamily protein (EF1790) FROM ENTEROCOCCUS FAECALIS V583 AT 1.80 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: E.110 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain B: E.110 No protein-ligand interaction detected (PLIP) MG.15: 1 residues within 4Å: Chain C: E.110 No protein-ligand interaction detected (PLIP) MG.20: 1 residues within 4Å: Chain D: E.110 No protein-ligand interaction detected (PLIP)

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: N.53, R.54 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: G.232, T.233, G.234, D.235 Ligand excluded by PLIP CL.8: 10 residues within 4Å: Chain A: H.88, P.92, A.94, M.95 Chain B: Q.55, Y.56, G.57, G.58, A.59 Ligands: EDO.10 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain C: N.53, R.54 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain D: G.232, T.233, G.234, D.235 Ligand excluded by PLIP CL.22: 10 residues within 4Å: Chain C: H.88, P.92, A.94, M.95 Chain D: Q.55, Y.56, G.57, G.58, A.59 Ligands: EDO.24 Ligand excluded by PLIP

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: H.172, T.230, G.232, T.233, G.234, D.235 Chain D: K.41 Ligand excluded by PLIP EDO.4: 2 residues within 4Å: Chain A: Y.288, K.291 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain B: T.287, Y.288, K.291 Ligand excluded by PLIP EDO.10: 8 residues within 4Å: Chain A: E.93, M.95 Chain B: Y.56, A.59, M.62, G.232, D.235 Ligands: CL.8 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain B: K.140, Q.141, K.166 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain B: S.155, Q.156, R.178, H.181 Ligand excluded by PLIP EDO.13: 8 residues within 4Å: Chain B: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 Ligands: EDO.14 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain B: E.165, K.166, P.250, I.252 Ligands: EDO.13 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain B: K.41 Chain C: H.172, T.230, G.232, T.233, G.234, D.235 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain C: Y.288, K.291 Ligand excluded by PLIP EDO.19: 7 residues within 4Å: Chain C: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 Ligand excluded by PLIP EDO.23: 3 residues within 4Å: Chain D: T.287, Y.288, K.291 Ligand excluded by PLIP EDO.24: 8 residues within 4Å: Chain C: E.93, M.95 Chain D: Y.56, A.59, M.62, G.232, D.235 Ligands: CL.22 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain D: K.140, Q.141, K.166 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain D: S.155, Q.156, R.178, H.181 Ligand excluded by PLIP EDO.27: 8 residues within 4Å: Chain D: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 Ligands: EDO.28 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain D: E.165, K.166, P.250, I.252 Ligands: EDO.27 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative kinase in the ribokinase-like superfamily from Enterococcus faecalis V583 (NP_815490.1) at 1.80 A resolution. To be published

Release Date

2007-09-11

Peptides

YjeF-related protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

YjeF-related protein

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