SMTL ID : 2r3e.1

CRYSTAL STRUCTURE OF a ribokinase-like superfamily protein (EF1790) FROM ENTEROCOCCUS FAECALIS V583 AT 1.95 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.100, E.101 Chain C: R.54, Q.55 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.55 Water bridges: C:K.82 EDO.2: 7 residues within 4Å: Chain A: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.201, A:T.202, A:A.215 Water bridges: A:T.202, A:G.216 EDO.3: 4 residues within 4Å: Chain B: E.100, E.101 Chain D: R.54, Q.55 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.55 Water bridges: D:K.82 EDO.4: 7 residues within 4Å: Chain B: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.201, B:T.202, B:A.215 Water bridges: B:T.202, B:G.216 EDO.5: 4 residues within 4Å: Chain B: R.54, Q.55 Chain C: E.100, E.101 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.55 Water bridges: B:K.82 EDO.6: 7 residues within 4Å: Chain C: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.201, C:T.202, C:A.215 Water bridges: C:T.202, C:G.216 EDO.7: 4 residues within 4Å: Chain A: R.54, Q.55 Chain D: E.100, E.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.55 Water bridges: A:K.82 EDO.8: 7 residues within 4Å: Chain D: E.165, Q.196, G.200, S.201, T.202, H.214, A.215 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.201, D:T.202, D:A.215 Water bridges: D:T.202, D:G.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative kinase in the ribokinase-like superfamily from Enterococcus faecalis V583 (NP_815490.1) at 1.95 A resolution. To be published

Release Date

2007-09-11

Peptides

YjeF-related protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

YjeF-related protein

Related Entries With Identical Sequence