SMTL ID : 2r3w.1

I84V HIV-1 protease in complex with a amino decorated pyrrolidine-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

1 x G3G: N,N'-(3S,4S)-PYRROLIDINE-3,4-DIYLBIS(4-AMINO-N-BENZYLBENZENESULFONAMIDE)(Non-covalent)

G3G.1: 24 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.30, V.32, I.47, G.48, I.50, V.82, V.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, V.82, V.84 25 PLIP interactions: 12 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:I.50, A:V.82, A:V.84, B:L.23, B:A.28, B:V.32, B:P.81, B:V.82, B:V.84 Hydrogen bonds: A:D.29, A:D.30, A:D.30, A:D.30, A:I.50, B:D.25, B:D.29, B:D.30, B:D.30, B:I.50 Salt bridges: A:D.25, B:D.25 Water bridges: B:R.8

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bottcher, J. et al., Structural and Kinetic Analysis of Pyrrolidine-Based Inhibitors of the Drug-Resistant Ile84Val Mutant of HIV-1 Protease. J.Mol.Biol. (2008)

Release Date

2008-09-02

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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