SMTL ID : 2r7c.1

Crystallographic and biochemical analysis of rotavirus NSP2 with nucleotides reveals an NDP kinase like activity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-octamer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.298, A:G.302, A:S.304, A:S.304, A:S.304, A:T.305 Water bridges: A:K.301, A:L.303 Salt bridges: A:R.210 PO4.2: 7 residues within 4Å: Chain B: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.298, B:G.302, B:S.304, B:S.304, B:S.304, B:T.305 Water bridges: B:K.301, B:L.303 Salt bridges: B:R.210 PO4.3: 7 residues within 4Å: Chain C: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:N.298, C:G.302, C:S.304, C:S.304, C:S.304, C:T.305 Water bridges: C:K.301, C:L.303 Salt bridges: C:R.210 PO4.4: 7 residues within 4Å: Chain D: R.210, N.298, K.301, G.302, L.303, S.304, T.305 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.298, D:G.302, D:S.304, D:S.304, D:S.304, D:T.305 Water bridges: D:K.301, D:L.303 Salt bridges: D:R.210 PO4.5: 7 residues within 4Å: Chain E: R.210, N.298, K.301, G.302, L.303, S.304, T.305 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:N.298, E:G.302, E:S.304, E:S.304, E:S.304, E:T.305, E:T.305 Water bridges: E:K.301, E:L.303 Salt bridges: E:R.210 PO4.6: 7 residues within 4Å: Chain F: R.210, N.298, K.301, G.302, L.303, S.304, T.305 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:N.298, F:G.302, F:S.304, F:S.304, F:S.304, F:T.305, F:T.305 Water bridges: F:K.301, F:L.303 Salt bridges: F:R.210 PO4.7: 7 residues within 4Å: Chain G: R.210, N.298, K.301, G.302, L.303, S.304, T.305 10 PLIP interactions: 10 interactions with chain G Hydrogen bonds: G:N.298, G:G.302, G:S.304, G:S.304, G:S.304, G:T.305, G:T.305 Water bridges: G:K.301, G:L.303 Salt bridges: G:R.210 PO4.8: 7 residues within 4Å: Chain H: R.210, N.298, K.301, G.302, L.303, S.304, T.305 10 PLIP interactions: 10 interactions with chain H Hydrogen bonds: H:N.298, H:G.302, H:S.304, H:S.304, H:S.304, H:T.305, H:T.305 Water bridges: H:K.301, H:L.303 Salt bridges: H:R.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, M. et al., Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity. J.Virol. (2007)

Release Date

2007-10-23

Peptides

Non-structural RNA-binding protein 35: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Non-structural RNA-binding protein 35

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