SMTL ID : 4g0a.1

Crystallographic Analysis of Rotavirus NSP2-RNA Complex Reveals Specific Recognition of 5'-GG Sequence for RTPase activity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-octamer

Ligands

8 x G- G- U: RNA (5'-R(P*GP*GP*U)-3')(Non-covalent)

G-G-U.1: 11 residues within 4Å: Chain A: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, T.244, N.248 Protein-ligand interaction information (PLIP) not available G-G-U.2: 10 residues within 4Å: Chain B: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, N.248 Protein-ligand interaction information (PLIP) not available G-G-U.3: 11 residues within 4Å: Chain C: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, T.244, N.248 Protein-ligand interaction information (PLIP) not available G-G-U.4: 11 residues within 4Å: Chain D: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, T.244, N.248 Protein-ligand interaction information (PLIP) not available G-G-U.10: 11 residues within 4Å: Chain E: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, T.244, N.248 Protein-ligand interaction information (PLIP) not available G-G-U.11: 10 residues within 4Å: Chain F: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, N.248 Protein-ligand interaction information (PLIP) not available G-G-U.12: 11 residues within 4Å: Chain G: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, T.244, N.248 Protein-ligand interaction information (PLIP) not available G-G-U.13: 11 residues within 4Å: Chain H: R.104, V.105, S.107, K.223, R.227, N.236, D.239, R.240, A.243, T.244, N.248 Protein-ligand interaction information (PLIP) not available

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain C: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain D: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP CL.14: 6 residues within 4Å: Chain E: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain F: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain G: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP CL.18: 6 residues within 4Å: Chain H: T.220, H.221, G.222, K.223, H.225, R.227 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.8: 5 residues within 4Å: Chain C: D.39, K.42, F.43, Y.44, P.55 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.39 NA.17: 5 residues within 4Å: Chain G: D.39, K.42, F.43, Y.44, P.55 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:D.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, L. et al., Crystallographic Analysis of Rotavirus NSP2-RNA Complex Reveals Specific Recognition of 5' GG Sequence for RTPase Activity. J.Virol. (2012)

Release Date

2012-08-22

Peptides

Non-structural protein 2: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

Non-structural protein 2

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