SMTL ID : 2rbv.1

Cytochrome C Peroxidase in complex with (1-methyl-1h-pyrrol-2-yl)-methylamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: L.28, M.117, N.194 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.28 Water bridges: A:I.38, A:Y.40, A:G.41, A:E.116

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 22 residues within 4Å: Chain A: P.42, V.43, R.46, W.49, P.143, D.144, A.145, F.156, L.169, M.170, A.172, H.173, L.175, G.176, K.177, T.178, H.179, N.182, S.183, L.230, T.232 Ligands: 278.3 26 PLIP interactions: 25 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.46, A:W.49, A:W.49, A:W.49, A:P.143, A:A.145, A:F.156, A:L.169, A:A.172, A:T.178 Hydrogen bonds: A:K.177, A:H.179, A:N.182, A:S.183, A:S.183 Water bridges: A:Y.34, A:R.46, A:G.82, A:H.179 Salt bridges: A:R.46, A:H.179, A:H.179 pi-Stacking: A:W.49 pi-Cation interactions: A:R.46 Metal complexes: A:H.173, H2O.6

1 x 278: 1-(1-methyl-1H-pyrrol-2-yl)methanamine(Non-covalent)

278.3: 11 residues within 4Å: Chain A: H.173, L.175, G.176, K.177, T.178, G.189, M.228, M.229, L.230, D.233 Ligands: HEM.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.173, A:T.178, A:L.230 Hydrogen bonds: A:M.228 pi-Stacking: A:H.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graves, A.P. et al., Rescoring docking hit lists for model cavity sites: predictions and experimental testing. J.Mol.Biol. (2008)

Release Date

2008-03-18

Peptides

Cytochrome C Peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Cytochrome C Peroxidase

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