SMTL ID : 2rbw.1

Cytochrome C Peroxidase W191G in complex with 1,2-dimethyl-1h-pyridin-5-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: L.28, E.116, M.117, N.194 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.28, A:E.116, A:N.194 Water bridges: A:Y.40, A:E.116 PO4.2: 1 residues within 4Å: Chain A: E.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.96 PO4.3: 6 residues within 4Å: Chain A: N.36, Y.37, I.38, A.192, N.193, N.194 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.37, A:N.194, A:N.194 Water bridges: A:G.189, A:N.194 PO4.4: 3 residues within 4Å: Chain A: Y.34, D.35, H.179 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.34 Water bridges: A:D.35, A:N.182 Salt bridges: A:H.179

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.5: 22 residues within 4Å: Chain A: P.42, V.43, R.46, W.49, P.143, D.144, A.145, F.156, L.169, M.170, A.172, H.173, L.175, G.176, K.177, T.178, H.179, N.182, S.183, L.230, T.232 Ligands: 275.6 26 PLIP interactions: 25 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.46, A:W.49, A:W.49, A:W.49, A:P.143, A:A.145, A:F.156, A:L.169, A:A.172, A:T.178, A:L.230 Hydrogen bonds: A:K.177, A:H.179, A:N.182, A:S.183, A:S.183 Water bridges: A:Y.34, A:G.82, A:H.179 Salt bridges: A:R.46, A:H.179, A:H.179 pi-Stacking: A:W.49 pi-Cation interactions: A:R.46 Metal complexes: A:H.173, H2O.8

1 x 275: 5-amino-1,2-dimethylpyridinium(Non-covalent)

275.6: 11 residues within 4Å: Chain A: H.173, L.175, G.176, K.177, T.178, P.188, M.228, M.229, L.230, D.233 Ligands: HEM.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.178, A:L.230 Hydrogen bonds: A:L.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graves, A.P. et al., Rescoring docking hit lists for model cavity sites: predictions and experimental testing. J.Mol.Biol. (2008)

Release Date

2008-03-18

Peptides

Cytochrome C Peroxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Cytochrome C Peroxidase

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