SMTL ID : 2rc8.1

Crystal structure of the NR3A ligand binding core complex with D-serine at 1.45 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: P.139, F.141 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: R.21, C.29, P.30, A.31 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: P.139, F.140, F.141, K.274 Ligand excluded by PLIP

2 x DSN: D-SERINE(Non-covalent)

DSN.3: 11 residues within 4Å: Chain A: Y.97, S.123, F.124, S.125, R.130, S.179, S.180, A.181, M.223, D.224, Y.252 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.123, A:S.125, A:S.125, A:S.125, A:S.180, A:A.181 Salt bridges: A:R.130 DSN.4: 11 residues within 4Å: Chain B: Y.97, S.123, F.124, S.125, R.130, S.179, S.180, A.181, M.223, D.224, Y.252 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.123, B:S.125, B:S.125, B:S.125, B:S.180, B:A.181 Salt bridges: B:R.130

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: D.74, V.281, L.282, K.285 No protein-ligand interaction detected (PLIP) GOL.6: 5 residues within 4Å: Chain A: L.112, L.113, G.115, P.257, P.258 No protein-ligand interaction detected (PLIP) GOL.8: 5 residues within 4Å: Chain B: L.112, L.113, G.115, P.257, P.258 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, Y. et al., Molecular mechanism of ligand recognition by NR3 subtype glutamate receptors. Embo J. (2008)

Release Date

2008-08-05

Peptides

Glutamate [NMDA] receptor subunit 3A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate [NMDA] receptor subunit 3A

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