SMTL ID : 2rhx.1

Crystal structure of the 3-MBT repeats from human L3MBTL1 bound to dimethyl-lysine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: W.15, S.16, W.17, E.18, G.314, S.317 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.17, A:E.18, A:S.317 Water bridges: A:G.314 SO4.2: 2 residues within 4Å: Chain A: R.269, H.307 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.269, A:H.307

1 x MLY: N-DIMETHYL-LYSINE(Non-covalent)

MLY.3: 6 residues within 4Å: Chain A: D.164, N.167, C.172, F.188, W.191, Y.195 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.191 Hydrogen bonds: A:Y.195 Salt bridges: A:D.164 pi-Cation interactions: A:W.191, A:W.191

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 6 residues within 4Å: Chain A: D.268, R.270, R.276, F.292, W.295, Y.299 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.268, A:R.270 Water bridges: A:R.270, A:R.276, A:R.276

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 4 residues within 4Å: Chain A: H.42, N.43, S.317, K.318 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger. Mol.Cell (2007)

Release Date

2007-12-11

Peptides

Lethal(3)malignant brain tumor-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lethal(3)malignant brain tumor-like protein

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