SMTL ID : 2rir.1 (5 other biounits)

Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-tetramer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: S.190 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain B: S.190 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain D: S.190 Ligand excluded by PLIP

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 21 residues within 4Å: Chain A: A.132, T.139, G.166, R.167, T.168, R.188, S.189, H.192, T.206, T.222, I.223, P.224, S.225, L.245, A.246, S.247, A.267, P.268, G.269, L.270, P.271 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:T.139 Hydrogen bonds: A:T.139, A:R.167, A:T.168, A:S.225, A:S.225, A:S.247, A:A.267, A:G.269, A:L.270 Water bridges: A:L.165, A:L.165, A:G.166, A:G.169 Salt bridges: A:R.167, A:R.167, A:R.188, A:H.192 pi-Cation interactions: A:R.188, A:R.188 NAP.4: 18 residues within 4Å: Chain B: T.139, G.166, R.167, T.168, R.188, H.192, T.206, T.222, I.223, P.224, L.245, A.246, S.247, A.267, P.268, G.269, L.270, P.271 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:T.139, B:T.168 Hydrogen bonds: B:L.165, B:R.167, B:T.168, B:G.169, B:S.189, B:T.206, B:L.245, B:S.247, B:G.269, B:L.270 Water bridges: B:H.192, B:H.192 Salt bridges: B:R.167, B:R.167, B:R.188, B:H.192 pi-Cation interactions: B:R.188, B:R.188 NAP.5: 18 residues within 4Å: Chain C: T.139, G.166, R.167, T.168, R.188, H.192, T.206, T.222, I.223, P.224, L.245, A.246, S.247, A.267, P.268, G.269, L.270, P.271 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:T.139, C:T.168 Hydrogen bonds: C:R.167, C:T.168, C:S.247, C:A.267, C:G.269, C:L.270 Water bridges: C:G.166, C:S.189, C:H.192, C:T.222 Salt bridges: C:R.167, C:R.167, C:R.188, C:H.192 pi-Cation interactions: C:R.188, C:R.188 NAP.7: 20 residues within 4Å: Chain D: T.139, G.166, R.167, T.168, A.187, R.188, S.189, H.192, T.206, T.222, I.223, P.224, L.245, A.246, S.247, A.267, P.268, G.269, L.270, P.271 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:T.139, D:T.168 Hydrogen bonds: D:R.167, D:T.168, D:G.169, D:S.189, D:L.245, D:S.247, D:G.269, D:L.270 Water bridges: D:L.165, D:L.165 Salt bridges: D:R.167, D:R.167, D:R.188, D:H.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis. To be Published

Release Date

2007-10-23

Peptides

Dipicolinate synthase, A chain: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dipicolinate synthase, A chain

Related Entries With Identical Sequence