SMTL ID : 2rir.6 (5 other biounits)

Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 20 residues within 4Å: Chain A: T.139, G.166, R.167, T.168, G.169, R.188, S.189, H.192, T.206, T.222, I.223, P.224, L.245, A.246, S.247, A.267, P.268, G.269, L.270, P.271 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.139 Hydrogen bonds: A:R.167, A:T.168, A:G.169, A:S.247, A:A.267, A:G.269, A:L.270 Salt bridges: A:R.167, A:R.167, A:R.188, A:H.192 NAP.4: 18 residues within 4Å: Chain B: T.139, L.165, G.166, R.167, T.168, R.188, H.192, T.206, T.222, I.223, P.224, L.245, S.247, A.267, P.268, G.269, L.270, P.271 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:T.139, B:T.168 Hydrogen bonds: B:L.165, B:R.167, B:T.168, B:G.169, B:T.206, B:S.247, B:A.267, B:G.269, B:L.270 Water bridges: B:G.166, B:H.192, B:H.192, B:T.222 Salt bridges: B:R.167, B:R.167, B:R.188, B:H.192 pi-Cation interactions: B:R.188, B:R.188

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain B: S.190 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain B: Q.19, L.66 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Crystal structure of dipicolinate synthase, A chain, from Bacillus subtilis. To be Published

Release Date

2007-10-23

Peptides

Dipicolinate synthase, A chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
H

Dipicolinate synthase, A chain

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