SMTL ID : 2uwn.1

Crystal structure of Human Complement Factor H, SCR domains 6-8 (H402 risk variant), in complex with ligand.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x GU4- YYJ: 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose(Non-covalent)

GU4-YYJ.1: 5 residues within 4Å: Chain A: H.41, Y.71, P.73, Y.74, H.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.74 Salt bridges: A:H.83, A:H.41, A:K.86

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: R.122 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.122

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: L.75, E.76, N.77, R.122, C.123 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: I.136, G.139, F.140 Ligand excluded by PLIP

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.85, K.86 Ligands: SO4.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.86 Salt bridges: A:R.85 SO4.6: 4 residues within 4Å: Chain A: F.87, V.88, K.91 Ligands: SO4.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.88 Salt bridges: A:K.91 SO4.7: 2 residues within 4Å: Ligands: SO4.5, SO4.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prosser, B.E. et al., Structural Basis for Complement Factor H Linked Age-Related Macular Degeneration. J.Exp.Med. (2007)

Release Date

2007-10-02

Peptides

HUMAN COMPLEMENT FACTOR H: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HUMAN COMPLEMENT FACTOR H

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