SMTL ID : 2v8e.1

Crystal structure of Human Complement Factor H, SCR domains 6-8 (H402 risk variant), in complex with ligand.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x GU4- YYJ: 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose(Non-covalent)

GU4-YYJ.1: 6 residues within 4Å: Chain A: H.41, Y.71, F.72, P.73, Y.74, H.83 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.74, A:Y.71, A:Y.71, A:F.72 Salt bridges: A:H.83, A:H.41, A:K.86 Water bridges: A:K.86, A:K.86

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: L.75, E.76, N.77, R.122, C.123 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: I.136, G.139, F.140 Ligand excluded by PLIP

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.85, K.86 Ligands: SO4.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.86 Water bridges: A:R.85, A:R.85 Salt bridges: A:R.85 SO4.5: 4 residues within 4Å: Chain A: F.87, V.88, K.91 Ligands: SO4.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.88 Salt bridges: A:K.91 SO4.6: 2 residues within 4Å: Ligands: SO4.4, SO4.5 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: Y.17, Y.49, W.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.49, A:Y.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prosser, B.E. et al., Structural Basis for Complement Factor H Linked Age-Related Macular Degeneration. J.Exp.Med. (2007)

Release Date

2007-10-02

Peptides

COMPLEMENT FACTOR H: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

COMPLEMENT FACTOR H

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