- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x H2U: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 8 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.14, MG.26
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.12, H2O.26, H2O.40
MG.3: 5 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.15, MG.27
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.12, H2O.26, H2O.40
MG.14: 8 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.2, MG.26
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.12, H2O.26, H2O.40
MG.15: 5 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.3, MG.27
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.12, H2O.26, H2O.40
MG.26: 8 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.2, MG.14
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.12, H2O.26, H2O.40
MG.27: 5 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.3, MG.15
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.12, H2O.26, H2O.40
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.4: 9 residues within 4Å:- Chain A: F.402, T.420, G.422, A.423
- Chain B: N.386, Y.387, D.388, V.410, T.426
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.423, B:D.388
- Water bridges: A:A.423, A:T.439, A:T.439
PG4.16: 9 residues within 4Å:- Chain B: F.402, T.420, G.422, A.423
- Chain C: N.386, Y.387, D.388, V.410, T.426
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:A.423, C:D.388
- Water bridges: B:A.423, B:T.439, B:T.439
PG4.28: 9 residues within 4Å:- Chain A: N.386, Y.387, D.388, V.410, T.426
- Chain C: F.402, T.420, G.422, A.423
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:D.388, C:A.423
- Water bridges: C:A.423, C:T.439, C:T.439
- 6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.5: 4 residues within 4Å:- Chain A: V.153, D.157, N.159, Q.162
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.159, A:Q.162
PGE.6: 5 residues within 4Å:- Chain A: E.49, N.50, Q.70, V.71, N.72
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.49, A:N.72
- Water bridges: A:N.50, A:I.51, A:N.72
PGE.17: 4 residues within 4Å:- Chain B: V.153, D.157, N.159, Q.162
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.159, B:Q.162
PGE.18: 5 residues within 4Å:- Chain B: E.49, N.50, Q.70, V.71, N.72
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.49, B:N.72
- Water bridges: B:N.50, B:I.51, B:N.72
PGE.29: 4 residues within 4Å:- Chain C: V.153, D.157, N.159, Q.162
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.159, C:Q.162
PGE.30: 5 residues within 4Å:- Chain C: E.49, N.50, Q.70, V.71, N.72
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:E.49, C:N.72
- Water bridges: C:N.50, C:I.51, C:N.72
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 4 residues within 4Å:- Chain A: K.360, N.362, H.363
- Chain B: K.392
Ligand excluded by PLIPSO4.8: 2 residues within 4Å:- Chain A: N.377
- Chain C: R.451
Ligand excluded by PLIPSO4.9: 3 residues within 4Å:- Chain A: R.331, R.333, P.334
Ligand excluded by PLIPSO4.10: 5 residues within 4Å:- Chain A: G.14, K.15, G.16, T.17, K.25
Ligand excluded by PLIPSO4.11: 3 residues within 4Å:- Chain A: H.57, E.78, Q.79
Ligand excluded by PLIPSO4.12: 2 residues within 4Å:- Chain A: H.57, G.58
Ligand excluded by PLIPSO4.19: 4 residues within 4Å:- Chain B: K.360, N.362, H.363
- Chain C: K.392
Ligand excluded by PLIPSO4.20: 2 residues within 4Å:- Chain A: R.451
- Chain B: N.377
Ligand excluded by PLIPSO4.21: 3 residues within 4Å:- Chain B: R.331, R.333, P.334
Ligand excluded by PLIPSO4.22: 5 residues within 4Å:- Chain B: G.14, K.15, G.16, T.17, K.25
Ligand excluded by PLIPSO4.23: 3 residues within 4Å:- Chain B: H.57, E.78, Q.79
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain B: H.57, G.58
Ligand excluded by PLIPSO4.31: 4 residues within 4Å:- Chain A: K.392
- Chain C: K.360, N.362, H.363
Ligand excluded by PLIPSO4.32: 2 residues within 4Å:- Chain B: R.451
- Chain C: N.377
Ligand excluded by PLIPSO4.33: 3 residues within 4Å:- Chain C: R.331, R.333, P.334
Ligand excluded by PLIPSO4.34: 5 residues within 4Å:- Chain C: G.14, K.15, G.16, T.17, K.25
Ligand excluded by PLIPSO4.35: 3 residues within 4Å:- Chain C: H.57, E.78, Q.79
Ligand excluded by PLIPSO4.36: 2 residues within 4Å:- Chain C: H.57, G.58
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mochalkin, I. et al., Characterization of Substrate Binding and Catalysis in the Potential Antibacterial Target N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu). Protein Sci. (2007)
- Release Date
- 2008-01-15
- Peptides
- BIFUNCTIONAL PROTEIN GLMU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x H2U: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 18 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mochalkin, I. et al., Characterization of Substrate Binding and Catalysis in the Potential Antibacterial Target N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu). Protein Sci. (2007)
- Release Date
- 2008-01-15
- Peptides
- BIFUNCTIONAL PROTEIN GLMU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A