- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 4 residues within 4Å:- Chain A: W.8, D.38, D.41, R.137
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.38
- Water bridges: A:W.8, A:D.41, A:R.137
EDO.7: 5 residues within 4Å:- Chain A: D.222
- Chain B: G.76, K.77, F.78, N.81
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:D.222, B:G.76, B:N.81
- Water bridges: A:T.220, B:N.89
EDO.8: 3 residues within 4Å:- Chain A: R.28, N.29
- Chain C: V.174
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.28, A:R.28, A:N.29
EDO.16: 4 residues within 4Å:- Chain B: W.8, D.38, D.41, R.137
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.38
- Water bridges: B:W.8, B:D.41, B:R.137
EDO.17: 5 residues within 4Å:- Chain B: D.222
- Chain D: G.76, K.77, F.78, N.81
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Hydrogen bonds: B:D.222, D:G.76, D:N.81
- Water bridges: B:T.220, D:N.89
EDO.18: 3 residues within 4Å:- Chain A: V.174
- Chain B: R.28, N.29
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.28, B:R.28, B:N.29
EDO.26: 4 residues within 4Å:- Chain C: W.8, D.38, D.41, R.137
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.38
- Water bridges: C:W.8, C:D.41, C:R.137
EDO.27: 5 residues within 4Å:- Chain A: G.76, K.77, F.78, N.81
- Chain C: D.222
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:G.76, A:N.81, C:D.222
- Water bridges: A:N.89, C:T.220
EDO.28: 3 residues within 4Å:- Chain C: R.28, N.29
- Chain D: V.174
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.28, C:R.28, C:N.29
EDO.36: 4 residues within 4Å:- Chain D: W.8, D.38, D.41, R.137
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:D.38
- Water bridges: D:W.8, D:D.41, D:R.137
EDO.37: 5 residues within 4Å:- Chain C: G.76, K.77, F.78, N.81
- Chain D: D.222
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:G.76, C:N.81, D:D.222
- Water bridges: C:N.89, D:T.220
EDO.38: 3 residues within 4Å:- Chain B: V.174
- Chain D: R.28, N.29
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.28, D:R.28, D:N.29
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.9: 5 residues within 4Å:- Chain A: K.23, W.25, N.146, E.232, Q.236
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:K.23, A:W.25
- Hydrogen bonds: A:W.25, A:N.146
- Water bridges: A:Q.236
ACT.10: 8 residues within 4Å:- Chain A: N.29, G.30, G.31, N.32, H.141, H.143, H.212
- Ligands: ZN.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.31, A:N.32
- Salt bridges: A:H.141, A:H.143, A:H.212
ACT.19: 5 residues within 4Å:- Chain B: K.23, W.25, N.146, E.232, Q.236
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:K.23, B:W.25
- Hydrogen bonds: B:W.25, B:N.146
- Water bridges: B:Q.236
ACT.20: 8 residues within 4Å:- Chain B: N.29, G.30, G.31, N.32, H.141, H.143, H.212
- Ligands: ZN.13
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.31, B:N.32
- Salt bridges: B:H.141, B:H.143, B:H.212
ACT.29: 5 residues within 4Å:- Chain C: K.23, W.25, N.146, E.232, Q.236
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:K.23, C:W.25
- Hydrogen bonds: C:W.25, C:N.146
- Water bridges: C:Q.236
ACT.30: 8 residues within 4Å:- Chain C: N.29, G.30, G.31, N.32, H.141, H.143, H.212
- Ligands: ZN.23
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:G.31, C:N.32
- Salt bridges: C:H.141, C:H.143, C:H.212
ACT.39: 5 residues within 4Å:- Chain D: K.23, W.25, N.146, E.232, Q.236
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:K.23, D:W.25
- Hydrogen bonds: D:W.25, D:N.146
- Water bridges: D:Q.236
ACT.40: 8 residues within 4Å:- Chain D: N.29, G.30, G.31, N.32, H.141, H.143, H.212
- Ligands: ZN.33
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.31, D:N.32
- Salt bridges: D:H.141, D:H.143, D:H.212
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grueninger, D. et al., Antenna Domain Mobility and Enzymatic Reaction of L-Rhamnulose-1-Phosphate Aldolase. Biochemistry (2008)
- Release Date
- 2008-01-08
- Peptides
- RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Grueninger, D. et al., Antenna Domain Mobility and Enzymatic Reaction of L-Rhamnulose-1-Phosphate Aldolase. Biochemistry (2008)
- Release Date
- 2008-01-08
- Peptides
- RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A