SMTL ID : 2v29.2 (1 other biounit)

L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT K15W)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: L.150, T.151, L.154, E.155, N.156, F.161, I.182, P.210 Chain C: Q.249 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:Q.249, A:L.150, A:L.154 EDO.2: 4 residues within 4Å: Chain A: H.143, P.188, H.212 Chain C: E.171 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:H.143 Water bridges: C:E.171 EDO.3: 6 residues within 4Å: Chain A: R.128, D.178, Q.202, K.203, H.204, S.205 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.128, A:R.128, A:H.204 Water bridges: A:A.131 EDO.6: 9 residues within 4Å: Chain A: Q.249 Chain B: L.150, T.151, L.154, E.155, N.156, F.161, I.182, P.210 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.249, B:L.150, B:L.154 EDO.7: 4 residues within 4Å: Chain A: E.171 Chain B: H.143, P.188, H.212 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.143 Water bridges: A:E.171 EDO.8: 6 residues within 4Å: Chain B: R.128, D.178, Q.202, K.203, H.204, S.205 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.128, B:R.128, B:H.204 Water bridges: B:A.131 EDO.11: 9 residues within 4Å: Chain C: L.150, T.151, L.154, E.155, N.156, F.161, I.182, P.210 Chain D: Q.249 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:Q.249, C:L.150, C:L.154 EDO.12: 4 residues within 4Å: Chain C: H.143, P.188, H.212 Chain D: E.171 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Water bridges: D:E.171 Hydrogen bonds: C:H.143 EDO.13: 6 residues within 4Å: Chain C: R.128, D.178, Q.202, K.203, H.204, S.205 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.128, C:R.128, C:H.204 Water bridges: C:A.131 EDO.16: 9 residues within 4Å: Chain B: Q.249 Chain D: L.150, T.151, L.154, E.155, N.156, F.161, I.182, P.210 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:L.150, D:L.154, B:Q.249 EDO.17: 4 residues within 4Å: Chain B: E.171 Chain D: H.143, P.188, H.212 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Water bridges: B:E.171 Hydrogen bonds: D:H.143 EDO.18: 6 residues within 4Å: Chain D: R.128, D.178, Q.202, K.203, H.204, S.205 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.128, D:R.128, D:H.204 Water bridges: D:A.131

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: W.15, A.16, D.19, L.221, D.222, F.225 Chain B: R.80 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.225 Hydrogen bonds: A:D.19, A:D.19, A:D.222 Water bridges: A:A.16, A:A.16 ACT.5: 7 residues within 4Å: Chain A: N.29, G.31, N.32, S.75, G.76, T.115, S.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.29, A:G.31, A:N.32, A:G.76 ACT.9: 7 residues within 4Å: Chain B: W.15, A.16, D.19, L.221, D.222, F.225 Chain D: R.80 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.225 Hydrogen bonds: B:D.19, B:D.19, B:D.222 Water bridges: B:A.16, B:A.16 ACT.10: 7 residues within 4Å: Chain B: N.29, G.31, N.32, S.75, G.76, T.115, S.116 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.29, B:G.31, B:N.32, B:G.76 ACT.14: 7 residues within 4Å: Chain A: R.80 Chain C: W.15, A.16, D.19, L.221, D.222, F.225 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.225 Hydrogen bonds: C:D.19, C:D.19, C:D.222 Water bridges: C:A.16, C:A.16 ACT.15: 7 residues within 4Å: Chain C: N.29, G.31, N.32, S.75, G.76, T.115, S.116 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.29, C:G.31, C:N.32, C:G.76 ACT.19: 7 residues within 4Å: Chain C: R.80 Chain D: W.15, A.16, D.19, L.221, D.222, F.225 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:F.225 Hydrogen bonds: D:D.19, D:D.19, D:D.222 Water bridges: D:A.16, D:A.16 ACT.20: 7 residues within 4Å: Chain D: N.29, G.31, N.32, S.75, G.76, T.115, S.116 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.29, D:G.31, D:N.32, D:G.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grueninger, D. et al., Antenna Domain Mobility and Enzymatic Reaction of L-Rhamnulose-1-Phosphate Aldolase. Biochemistry (2008)

Release Date

2008-01-08

Peptides

RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

RHAMNULOSE-1-PHOSPHATE ALDOLASE

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