SMTL ID : 2v38.1

Family 5 endoglucanase Cel5A from Bacillus agaradhaerens in complex with cellobio-derived noeuromycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.152, E.156, Q.189 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.152, A:E.156 Water bridges: A:K.152, A:N.188, A:A.191 GOL.2: 6 residues within 4Å: Chain A: T.146, W.147, G.148, N.149, H.184, N.188 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.147, A:G.148, A:N.149, A:N.188 Water bridges: A:H.184 GOL.3: 5 residues within 4Å: Chain A: L.103, E.139, W.178, A.234 Ligands: IFL.5 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: Y.46, K.50, R.53, L.92 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.46, A:Y.46 Water bridges: A:K.50, A:R.53, A:R.53 Salt bridges: A:K.50, A:R.53

1 x IFL: (3S,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PIPERIDIN-2-ONE(Non-covalent)

IFL.5: 13 residues within 4Å: Chain A: Y.66, H.101, L.103, N.138, E.139, Y.202, E.228, A.234, T.235, G.236, W.262 Ligands: GOL.3, IDR.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.66, A:Y.66, A:N.138, A:E.139, A:Y.202, A:T.235

1 x IDR: alpha-L-idopyranuronic acid(Non-covalent)

IDR.6: 9 residues within 4Å: Chain A: H.35, W.39, Y.66, L.103, G.236, W.262, K.267, E.269 Ligands: IFL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.262, A:K.267, A:K.267, A:E.269 Water bridges: A:E.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meloncelli, P.J. et al., D-Glucosylated Derivatives of Isofagomine and Noeuromycin and Their Potential as Inhibitors of Beta-Glycoside Hydrolases. To be Published

Release Date

2007-06-26

Peptides

ENDOGLUCANASE 5A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDOGLUCANASE 5A

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