SMTL ID : 2v7g.2 (3 other biounits)

Crystal Structure of an Engineered Urocanase Tetramer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: K.87 Chain B: D.535, M.554, I.555 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:M.554 Water bridges: A:K.87 Salt bridges: A:K.87 ACT.2: 5 residues within 4Å: Chain A: E.79, V.91, K.93 Chain B: G.549, D.551 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.551 Water bridges: A:K.93 ACT.3: 8 residues within 4Å: Chain A: Y.52, T.133, Y.139, G.144, I.145, M.178, R.362, D.443 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.133, A:D.443 Water bridges: A:G.144 Salt bridges: A:R.362 ACT.13: 8 residues within 4Å: Chain C: Y.52, T.133, Y.139, G.144, I.145, M.178, R.362, D.443 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.443 Water bridges: C:I.140, C:G.144 Salt bridges: C:R.362 ACT.14: 3 residues within 4Å: Chain C: Q.199, R.202, W.281 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.199 Salt bridges: C:R.202 ACT.18: 5 residues within 4Å: Chain D: H.268, G.324, N.454, R.455 Ligands: NAD.20 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:H.268 Salt bridges: D:R.455 ACT.19: 6 residues within 4Å: Chain D: Y.52, T.133, Y.139, G.144, R.362, D.443 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.133 Water bridges: D:G.144, D:I.145, D:R.362 Salt bridges: D:R.362

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: F.340, P.453, N.454, E.458, A.459, D.465 Chain B: W.112 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.329, A:A.459, A:D.465, A:D.465 GOL.5: 4 residues within 4Å: Chain A: E.151, R.158, L.353, H.389 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.158, A:R.158, A:W.412 Water bridges: A:E.151, A:E.151, A:R.356 GOL.6: 6 residues within 4Å: Chain A: H.160, Q.314, P.319, T.320, P.343, Y.349 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.314, A:T.320, A:T.320 GOL.8: 8 residues within 4Å: Chain B: S.198, H.241, G.242, N.243, L.275, T.280, W.281 Ligands: GOL.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.281 Water bridges: B:N.243, B:E.246 GOL.9: 4 residues within 4Å: Chain B: E.246, G.278, T.280 Ligands: GOL.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.246 Water bridges: B:E.246, B:E.246, B:W.279 GOL.10: 6 residues within 4Å: Chain B: S.198, Q.199, Q.200, S.201, H.241, W.281 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.200, B:S.201, B:S.201, B:H.241 GOL.11: 7 residues within 4Å: Chain B: Q.147, E.151, R.158, D.387, H.389, L.390, W.412 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.147, B:R.158, B:H.389, B:W.412, B:W.412 GOL.15: 10 residues within 4Å: Chain B: P.276, I.277, W.279, A.298, S.302 Chain C: P.276, I.277, W.279, A.298, S.302 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.302, B:W.279 GOL.16: 7 residues within 4Å: Chain C: R.356, V.358, D.387, L.390, W.412, V.413, L.417 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.356, C:R.356, C:D.387

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.7: 35 residues within 4Å: Chain A: E.44, Y.52, G.53, G.54, Q.131, I.145, G.174, L.175, G.176, G.177, M.178, G.179, I.196, E.197, S.198, Q.199, R.202, G.242, N.243, A.244, Q.264, T.265, S.266, H.268, G.273, Y.274, L.275, W.281, Y.323, G.324, N.325, F.345, L.445, R.455, G.493 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:I.145 Hydrogen bonds: A:G.53, A:G.54, A:Q.131, A:Q.131, A:L.175, A:G.176, A:G.177, A:M.178, A:G.179, A:S.198, A:Q.199, A:Q.199, A:N.243, A:A.244, A:Q.264, A:T.265, A:S.266, A:S.266, A:L.275, A:Y.323 Water bridges: A:E.44, A:Q.199, A:Y.323 NAD.12: 26 residues within 4Å: Chain B: G.174, G.176, G.177, M.178, G.179, I.196, E.197, S.198, Q.199, R.202, G.242, N.243, A.244, Q.264, T.265, S.266, H.268, G.273, Y.274, L.275, W.281, Y.323, G.324, N.325, F.345, R.455 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:M.178, B:Y.323 Hydrogen bonds: B:G.176, B:G.177, B:M.178, B:G.179, B:S.198, B:S.198, B:Q.199, B:R.202, B:N.243, B:A.244, B:S.266, B:S.266, B:H.268, B:L.275, B:Y.323, B:R.455 Salt bridges: B:R.202 NAD.17: 35 residues within 4Å: Chain C: E.44, Y.52, G.53, G.54, Q.131, I.145, G.174, L.175, G.176, G.177, M.178, G.179, I.196, E.197, S.198, Q.199, R.202, G.242, N.243, A.244, Q.264, T.265, S.266, H.268, G.273, Y.274, L.275, W.281, Y.323, G.324, N.325, F.345, L.445, R.455, G.493 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:I.145, C:M.178 Hydrogen bonds: C:G.53, C:G.54, C:Q.131, C:Q.131, C:G.176, C:G.177, C:M.178, C:G.179, C:S.198, C:Q.199, C:Q.199, C:N.243, C:A.244, C:Q.264, C:T.265, C:S.266, C:S.266, C:L.275, C:Y.323 Water bridges: C:E.44 NAD.20: 27 residues within 4Å: Chain D: G.174, G.176, G.177, M.178, G.179, I.196, E.197, S.198, Q.199, R.202, G.242, N.243, A.244, Q.264, T.265, S.266, H.268, G.273, Y.274, L.275, W.281, Y.323, G.324, N.325, F.345, R.455 Ligands: ACT.18 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:M.178, D:Y.323, D:Y.323 Hydrogen bonds: D:G.176, D:G.177, D:M.178, D:G.179, D:S.198, D:S.198, D:Q.199, D:R.202, D:R.202, D:N.243, D:A.244, D:T.265, D:S.266, D:S.266, D:L.275, D:R.455 Water bridges: D:R.202, D:R.202 Salt bridges: D:R.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grueninger, D. et al., Designed Protein-Protein Association. Science (2008)

Release Date

2008-01-15

Peptides

UROCANATE HYDRATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
A

D
C

UROCANATE HYDRATASE

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