SMTL ID : 2v7g.3 (3 other biounits)

Crystal Structure of an Engineered Urocanase Tetramer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 8 residues within 4Å: Chain A: Y.52, T.133, Y.139, G.144, I.145, M.178, R.362, D.443 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.443 Water bridges: A:I.140, A:G.144 Salt bridges: A:R.362 ACT.2: 3 residues within 4Å: Chain A: Q.199, R.202, W.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.199 Salt bridges: A:R.202 ACT.6: 5 residues within 4Å: Chain B: H.268, G.324, N.454, R.455 Ligands: NAD.8 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:H.268 Salt bridges: B:R.455 ACT.7: 6 residues within 4Å: Chain B: Y.52, T.133, Y.139, G.144, R.362, D.443 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.133 Water bridges: B:G.144, B:I.145, B:R.362 Salt bridges: B:R.362

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: P.276, I.277, W.279, A.298, S.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.277, A:S.302 GOL.4: 7 residues within 4Å: Chain A: R.356, V.358, D.387, L.390, W.412, V.413, L.417 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.356, A:R.356, A:D.387

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.5: 35 residues within 4Å: Chain A: E.44, Y.52, G.53, G.54, Q.131, I.145, G.174, L.175, G.176, G.177, M.178, G.179, I.196, E.197, S.198, Q.199, R.202, G.242, N.243, A.244, Q.264, T.265, S.266, H.268, G.273, Y.274, L.275, W.281, Y.323, G.324, N.325, F.345, L.445, R.455, G.493 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.145, A:M.178 Hydrogen bonds: A:G.53, A:G.54, A:Q.131, A:Q.131, A:G.176, A:G.177, A:M.178, A:G.179, A:S.198, A:Q.199, A:Q.199, A:N.243, A:A.244, A:Q.264, A:T.265, A:S.266, A:S.266, A:L.275, A:Y.323 Water bridges: A:E.44 NAD.8: 27 residues within 4Å: Chain B: G.174, G.176, G.177, M.178, G.179, I.196, E.197, S.198, Q.199, R.202, G.242, N.243, A.244, Q.264, T.265, S.266, H.268, G.273, Y.274, L.275, W.281, Y.323, G.324, N.325, F.345, R.455 Ligands: ACT.6 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:M.178, B:Y.323, B:Y.323 Hydrogen bonds: B:G.176, B:G.177, B:M.178, B:G.179, B:S.198, B:S.198, B:Q.199, B:R.202, B:R.202, B:N.243, B:A.244, B:T.265, B:S.266, B:S.266, B:L.275, B:R.455 Water bridges: B:R.202, B:R.202 Salt bridges: B:R.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grueninger, D. et al., Designed Protein-Protein Association. Science (2008)

Release Date

2008-01-15

Peptides

UROCANATE HYDRATASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

UROCANATE HYDRATASE

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