SMTL ID : 2vcq.1 (1 other biounit)

Complex structure of prostaglandin D2 synthase at 1.95A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 12 residues within 4Å: Chain A: Y.8, F.9, R.14, W.39, K.43, G.49, K.50, I.51, P.52, Q.63, S.64 Chain B: D.97 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.50 Hydrogen bonds: A:R.14, A:I.51, A:I.51, A:Q.63, A:Q.63, A:Q.63, A:S.64 Water bridges: A:Q.63, A:L.65, A:D.96 Salt bridges: A:R.14, A:K.43 GSH.3: 12 residues within 4Å: Chain A: D.97 Chain B: Y.8, F.9, R.14, W.39, K.43, K.50, I.51, P.52, Q.63, S.64 Ligands: D25.4 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.50 Hydrogen bonds: B:R.14, B:K.50, B:I.51, B:I.51, B:Q.63, B:S.64, A:D.97 Water bridges: B:K.50, B:Q.63, B:Q.63, B:S.64, B:L.65, B:D.96, B:D.96 Salt bridges: B:R.14, B:K.43

2 x D25: 3-phenyl-5-(1H-pyrazol-3-yl)isoxazole(Non-covalent)

D25.2: 6 residues within 4Å: Chain A: G.13, R.14, M.99, W.104, Y.152, L.199 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.14, A:M.99, A:L.199 pi-Stacking: A:W.104, A:W.104 D25.4: 8 residues within 4Å: Chain B: M.11, G.13, R.14, M.99, W.104, Y.152, L.199 Ligands: GSH.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:R.14, B:M.99, B:W.104, B:L.199 Water bridges: B:G.13 pi-Stacking: B:W.104, B:W.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hohwy, M. et al., Novel Prostaglandin D Synthase Inhibitors Generated by Fragment-Based Drug Design. J.Med.Chem. (2008)

Release Date

2008-04-15

Peptides

GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE

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