SMTL ID : 2vcz.1 (1 other biounit)

Complex structure of prostaglandin D2 synthase at 1.95A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 11 residues within 4Å: Chain A: Y.8, R.14, W.39, K.43, G.49, K.50, I.51, P.52, Q.63, S.64 Chain B: D.97 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:K.50 Hydrogen bonds: A:R.14, A:I.51, A:I.51, A:Q.63, A:Q.63, A:S.64, B:D.97 Water bridges: A:L.65 Salt bridges: A:R.14, A:K.43 GSH.3: 12 residues within 4Å: Chain A: D.97 Chain B: Y.8, F.9, R.14, W.39, K.43, G.49, K.50, I.51, P.52, Q.63, S.64 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.50 Hydrogen bonds: B:K.50, B:I.51, B:I.51, B:Q.63, B:S.64, A:D.97 Water bridges: B:R.14, B:Q.63, B:Q.63, B:S.64, B:L.65, B:D.96 Salt bridges: B:R.14, B:K.43

1 x VC3: 3-(4-nitrophenyl)-1H-pyrazole(Non-covalent)

VC3.2: 8 residues within 4Å: Chain B: M.11, G.13, R.14, D.96, M.99, W.104, Y.152, L.199 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:R.14, B:M.99 Hydrogen bonds: B:D.96, B:Y.152, B:Y.152 pi-Stacking: B:W.104, B:W.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hohwy, M. et al., Novel Prostaglandin D Synthase Inhibitors Generated by Fragment-Based Drug Design. J.Med.Chem. (2008)

Release Date

2008-04-15

Peptides

GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLUTATHIONE-REQUIRING PROSTAGLANDIN D SYNTHASE

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