- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
CAP.2: 22 residues within 4Å:- Chain A: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain B: E.60, T.65, W.66, N.123
- Ligands: MG.1
29 PLIP interactions:26 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:T.173, A:T.173, A:K.175, A:D.203, A:H.298, A:S.379, A:G.381, A:G.403, A:G.404, B:T.65, B:N.123
- Water bridges: A:K.177, A:K.177, A:K.177, A:R.295, A:R.295, A:S.328, A:G.380, A:I.382, A:I.382, A:G.405, B:T.65
- Salt bridges: A:K.175, A:K.175, A:K.177, A:R.295, A:H.327, A:K.334, A:K.334
CAP.9: 23 residues within 4Å:- Chain A: E.60, T.65, W.66, N.123
- Chain B: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Ligands: MG.8
31 PLIP interactions:27 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:T.173, B:K.175, B:E.204, B:H.298, B:S.379, B:G.381, B:G.403, B:G.404, A:T.65, A:T.65, A:N.123
- Water bridges: B:K.177, B:K.177, B:K.177, B:R.295, B:R.295, B:R.295, B:R.295, B:G.329, B:G.329, B:I.382, B:I.382, B:I.382, A:E.60
- Salt bridges: B:K.175, B:K.175, B:K.177, B:R.295, B:H.327, B:K.334, B:K.334
CAP.15: 21 residues within 4Å:- Chain C: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain D: E.60, T.65, W.66, N.123
- Ligands: MG.14
33 PLIP interactions:30 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:T.173, C:T.173, C:K.175, C:D.203, C:H.298, C:S.379, C:S.379, C:G.381, C:G.403, C:G.404, D:T.65, D:T.65, D:N.123
- Water bridges: C:T.173, C:K.177, C:K.177, C:K.177, C:K.177, C:R.295, C:R.295, C:R.295, C:G.329, C:G.329, C:I.382, C:I.382, C:Q.401
- Salt bridges: C:K.175, C:K.175, C:K.177, C:R.295, C:H.327, C:K.334, C:K.334
CAP.20: 22 residues within 4Å:- Chain C: E.60, T.65, W.66, N.123
- Chain D: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.19
28 PLIP interactions:25 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:T.173, D:K.175, D:D.203, D:H.298, D:S.379, D:S.379, D:G.380, D:G.381, D:G.403, D:G.404, C:T.65, C:T.65, C:N.123
- Water bridges: D:T.173, D:T.173, D:K.177, D:R.295, D:G.329, D:G.329, D:I.382, D:G.405
- Salt bridges: D:K.175, D:K.175, D:K.177, D:R.295, D:H.327, D:K.334, D:K.334
CAP.25: 21 residues within 4Å:- Chain E: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain F: E.60, T.65, W.66, N.123
- Ligands: MG.24
32 PLIP interactions:29 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:T.173, E:T.173, E:K.175, E:D.203, E:H.298, E:S.379, E:G.381, E:G.403, E:G.404, F:T.65, F:N.123
- Water bridges: E:T.173, E:K.177, E:K.177, E:K.177, E:R.295, E:R.295, E:R.295, E:G.329, E:S.379, E:G.380, E:I.382, E:I.382, E:G.405, F:T.65
- Salt bridges: E:K.175, E:K.175, E:K.177, E:R.295, E:H.327, E:K.334, E:K.334
CAP.32: 23 residues within 4Å:- Chain E: E.60, T.65, W.66, N.123
- Chain F: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Ligands: MG.31
26 PLIP interactions:23 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:T.173, F:K.175, F:E.204, F:H.298, F:S.379, F:S.379, F:G.381, F:G.403, F:G.404, E:T.65, E:T.65, E:N.123
- Water bridges: F:K.177, F:K.177, F:R.295, F:R.295, F:G.329, F:I.382, F:G.405
- Salt bridges: F:K.175, F:K.175, F:K.177, F:R.295, F:H.327, F:K.334, F:K.334
CAP.40: 22 residues within 4Å:- Chain G: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Chain H: E.60, T.65, W.66, N.123
- Ligands: MG.39
29 PLIP interactions:26 interactions with chain G, 3 interactions with chain H- Hydrogen bonds: G:T.173, G:T.173, G:K.175, G:E.204, G:S.379, G:G.381, G:G.403, G:G.404, H:T.65, H:N.123
- Water bridges: G:T.173, G:T.173, G:K.177, G:R.295, G:R.295, G:H.298, G:G.329, G:G.329, G:G.380, G:I.382, G:I.382, H:T.65
- Salt bridges: G:K.175, G:K.175, G:K.177, G:R.295, G:H.327, G:K.334, G:K.334
CAP.47: 22 residues within 4Å:- Chain G: E.60, T.65, W.66, N.123
- Chain H: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.46
28 PLIP interactions:23 interactions with chain H, 5 interactions with chain G- Hydrogen bonds: H:T.173, H:K.175, H:D.203, H:H.298, H:S.379, H:G.380, H:G.381, H:G.403, H:G.404, G:T.65, G:N.123
- Water bridges: H:K.177, H:R.295, H:R.295, H:G.329, H:G.329, H:I.382, H:I.382, G:E.60, G:T.65, G:T.65
- Salt bridges: H:K.175, H:K.175, H:K.177, H:R.295, H:H.327, H:K.334, H:K.334
- 43 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 7 residues within 4Å:- Chain A: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.4
Ligand excluded by PLIPEDO.4: 9 residues within 4Å:- Chain A: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.3
Ligand excluded by PLIPEDO.5: 3 residues within 4Å:- Chain A: Y.20, E.52
- Chain B: F.469
Ligand excluded by PLIPEDO.6: 6 residues within 4Å:- Chain A: R.295, H.298, D.302, F.311, G.337, D.473
Ligand excluded by PLIPEDO.7: 5 residues within 4Å:- Chain A: L.270, G.273, F.274
- Chain B: L.270, T.271
Ligand excluded by PLIPEDO.10: 8 residues within 4Å:- Chain B: Y.24, G.64, T.67, T.68, V.69, D.72, L.77
- Ligands: EDO.11
Ligand excluded by PLIPEDO.11: 9 residues within 4Å:- Chain B: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.10
Ligand excluded by PLIPEDO.12: 4 residues within 4Å:- Chain A: F.469
- Chain B: Y.20, E.52, A.129
Ligand excluded by PLIPEDO.13: 4 residues within 4Å:- Chain B: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.16: 7 residues within 4Å:- Chain C: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.17
Ligand excluded by PLIPEDO.17: 9 residues within 4Å:- Chain C: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.16
Ligand excluded by PLIPEDO.18: 2 residues within 4Å:- Chain C: L.270
- Chain D: L.270
Ligand excluded by PLIPEDO.21: 8 residues within 4Å:- Chain D: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain C: F.469
- Chain D: Y.20, E.52, A.129
Ligand excluded by PLIPEDO.23: 4 residues within 4Å:- Chain D: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.26: 7 residues within 4Å:- Chain E: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.27
Ligand excluded by PLIPEDO.27: 9 residues within 4Å:- Chain E: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.26
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain E: Y.20, V.48, E.52, A.129
Ligand excluded by PLIPEDO.29: 4 residues within 4Å:- Chain E: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.30: 6 residues within 4Å:- Chain E: E.336, G.337, E.338, V.341, F.345, D.473
Ligand excluded by PLIPEDO.33: 2 residues within 4Å:- Chain E: L.270
- Chain F: L.270
Ligand excluded by PLIPEDO.34: 7 residues within 4Å:- Chain E: P.176
- Chain F: T.63, G.64, T.65, T.67, V.69, D.72
Ligand excluded by PLIPEDO.35: 9 residues within 4Å:- Chain F: G.16, V.17, K.18, D.19, Y.20, T.65, W.66, T.67, T.68
Ligand excluded by PLIPEDO.36: 3 residues within 4Å:- Chain E: F.469
- Chain F: E.52, A.129
Ligand excluded by PLIPEDO.37: 4 residues within 4Å:- Chain F: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.38: 6 residues within 4Å:- Chain F: R.295, H.298, F.311, S.328, E.336, F.345
Ligand excluded by PLIPEDO.41: 7 residues within 4Å:- Chain G: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.42
Ligand excluded by PLIPEDO.42: 9 residues within 4Å:- Chain G: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.41
Ligand excluded by PLIPEDO.43: 4 residues within 4Å:- Chain G: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.44: 7 residues within 4Å:- Chain G: R.295, S.328, G.329, E.336, G.337, T.342, F.345
Ligand excluded by PLIPEDO.45: 7 residues within 4Å:- Chain G: L.270, G.273, F.274
- Chain H: L.270, T.271, G.272, G.273
Ligand excluded by PLIPEDO.48: 7 residues within 4Å:- Chain H: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.49
Ligand excluded by PLIPEDO.49: 7 residues within 4Å:- Chain H: K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.48
Ligand excluded by PLIPEDO.50: 4 residues within 4Å:- Chain G: F.469
- Chain H: Y.20, E.52, A.129
Ligand excluded by PLIPEDO.51: 4 residues within 4Å:- Chain H: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.52: 5 residues within 4Å:- Chain H: R.295, E.336, V.341, F.345, D.473
Ligand excluded by PLIPEDO.53: 8 residues within 4Å:- Chain H: Y.226, K.227, A.230
- Chain J: K.49, E.55, S.56, D.69, N.70
Ligand excluded by PLIPEDO.54: 6 residues within 4Å:- Chain J: G.37, W.38, I.39, F.81, G.82, C.83
Ligand excluded by PLIPEDO.55: 7 residues within 4Å:- Chain K: G.37, W.38, I.39, F.81, G.82, C.83, R.84
Ligand excluded by PLIPEDO.56: 6 residues within 4Å:- Chain L: G.37, W.38, I.39, M.80, F.81, G.82
Ligand excluded by PLIPEDO.57: 6 residues within 4Å:- Chain N: G.37, W.38, I.39, F.81, G.82, C.83
Ligand excluded by PLIPEDO.58: 7 residues within 4Å:- Chain A: Y.226, K.227, A.230
- Chain O: K.49, E.55, S.56, D.69
Ligand excluded by PLIPEDO.59: 7 residues within 4Å:- Chain O: G.37, W.38, I.39, F.81, G.82, C.83, R.84
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia-Murria, M.-J. et al., Structural and Functional Consequences of the Replacement of Proximal Residues Cys-172 and Cys-192 in the Large Subunit of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Chlamydomonas Reinhardtii. Biochem.J. (2008)
- Release Date
- 2008-11-04
- Peptides
- RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN: ABCDEFGH
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1: IJKLMNOP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
- 43 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcia-Murria, M.-J. et al., Structural and Functional Consequences of the Replacement of Proximal Residues Cys-172 and Cys-192 in the Large Subunit of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Chlamydomonas Reinhardtii. Biochem.J. (2008)
- Release Date
- 2008-11-04
- Peptides
- RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN: ABCDEFGH
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1: IJKLMNOP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
P