SMTL ID : 2vq1.1 (1 other biounit)

anti trimeric Lewis X Fab54-5C10-A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GLY: GLYCINE(Non-covalent)

GLY.1: 9 residues within 4Å: Chain A: L.165, S.167, S.181, S.182, T.183 Chain B: V.171, S.181, L.182, S.183 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.181, A:S.181, A:T.183, A:T.183, A:T.183 GLY.2: 6 residues within 4Å: Chain A: K.44, K.50, L.52, F.67, E.86, D.87 7 PLIP interactions: 5 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:K.44, A:D.87, A:D.87, G.2, G.2 Salt bridges: A:K.44, A:K.50 GLY.5: 6 residues within 4Å: Chain B: A.119, T.120, T.122, F.151, G.178, F.179 3 PLIP interactions: 2 Ligand-Ligand interactions, 1 interactions with chain B Hydrogen bonds: G.5, G.5, B:T.120

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: T.102, F.103, G.104, G.105 Chain B: G.46, L.47 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:F.103, A:G.104, B:L.47 Water bridges: B:L.47 GOL.6: 4 residues within 4Å: Chain B: D.57, K.73, D.74, S.75 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.57, B:D.74, B:S.75 Water bridges: B:K.73, B:S.76

1 x AZI: AZIDE ION(Non-covalent)

AZI.4: 4 residues within 4Å: Chain A: Q.47, S.48 Chain B: Y.96, Q.110 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.96, A:Q.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Geus, D.C. et al., Characterization of a Diagnostic Fab Fragment Binding Trimeric Lewis X. Proteins (2009)

Release Date

2009-01-27

Peptides

IGKV1-117 PROTEIN: A
ANTI-HUMAN FC GAMMA RECEPTOR III 3G8 GAMMA HEAVY CHAIN VARIABLE REGION: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IGKV1-117 PROTEIN

ANTI-HUMAN FC GAMMA RECEPTOR III 3G8 GAMMA HEAVY CHAIN VARIABLE REGION

Related Entries With Identical Sequence