SMTL ID : 2vq1.2 (1 other biounit)

anti trimeric Lewis X Fab54-5C10-A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

5 x GLY: GLYCINE(Non-covalent)

GLY.1: 9 residues within 4Å: Chain A: L.165, S.167, S.181, T.183 Chain B: L.146, V.171, S.181, L.182, S.183 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.165, A:S.181, A:T.183, B:S.181 GLY.2: 7 residues within 4Å: Chain A: L.42, K.44, K.50, L.52, P.64, E.86, D.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.44, A:D.87 Salt bridges: A:K.44, A:K.50 GLY.3: 6 residues within 4Å: Chain A: H.31, N.33, F.37, T.96, W.101 Chain B: F.103 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.33, A:T.96, A:T.96, B:F.103 Salt bridges: A:H.31 GLY.4: 7 residues within 4Å: Chain B: P.42, S.43, T.92, A.93, T.113, T.115, E.153 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.43, B:S.43, B:S.43, B:T.92 Water bridges: B:Y.180 GLY.5: 6 residues within 4Å: Chain B: A.119, T.120, T.122, F.151, G.178, F.179 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Ligand interactions Hydrogen bonds: B:T.120, B:T.122, G.5, G.5

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: I.90, F.92, G.104, G.105, G.106 Chain B: Q.41, K.45, G.46, L.47 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.104, B:Q.41, B:K.45, B:L.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Geus, D.C. et al., Characterization of a Diagnostic Fab Fragment Binding Trimeric Lewis X. Proteins (2009)

Release Date

2009-01-27

Peptides

IGKV1-117 PROTEIN: A
ANTI-HUMAN FC GAMMA RECEPTOR III 3G8 GAMMA HEAVY CHAIN VARIABLE REGION: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

IGKV1-117 PROTEIN

ANTI-HUMAN FC GAMMA RECEPTOR III 3G8 GAMMA HEAVY CHAIN VARIABLE REGION

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