SMTL ID : 2vtw.1 (1 other biounit)

STRUCTURE OF THE C-TERMINAL HEAD DOMAIN OF THE FOWL ADENOVIRUS TYPE 1 SHORT FIBRE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.79, L.80, T.81, Q.82 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.80, A:T.81, A:T.81, A:Q.82, A:Q.82 Water bridges: A:S.78 SO4.2: 2 residues within 4Å: Chain A: R.135 Chain B: R.127 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.127, A:R.135 Water bridges: A:S.146 SO4.3: 4 residues within 4Å: Chain B: F.79, L.80, T.81, Q.82 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.79, B:L.80, B:T.81, B:Q.82, B:Q.82 SO4.5: 5 residues within 4Å: Chain C: S.78, F.79, L.80, T.81, Q.82 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:L.80, C:T.81, C:Q.82, C:Q.82 SO4.6: 2 residues within 4Å: Chain C: R.135, S.146 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.146, C:S.146, C:S.146 Salt bridges: C:R.135

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain B: S.24, N.68, A.69, R.70, Y.71 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.24, B:R.70, B:Y.71 Water bridges: B:N.68, B:R.70, B:R.70, B:R.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Bakkouri, M. et al., Structure of the C-Terminal Head Domain of the Fowl Adenovirus Type 1 Short Fibre. Virology (2008)

Release Date

2008-06-17

Peptides

FIBER PROTEIN 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

FIBER PROTEIN 2

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