SMTL ID : 2vvu.2 (2 other biounits)

Aminopyrrolidine Factor Xa inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x H22: 5-chloro-N-[(3R)-1-(2-{[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]amino}-2-oxoethyl)pyrrolidin-3-yl]thiophene-2-carboxamide

H22.1: 17 residues within 4Å: Chain A: E.83, T.84, Y.85, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.162, A:W.205, A:W.205 Hydrogen bonds: A:G.206, A:G.208 Water bridges: A:S.185 pi-Stacking: A:Y.85, A:F.162, A:F.162, A:W.205, A:W.205

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.56, N.58, Q.61, E.62, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.2

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: Y.173, D.174, A.210, R.211, K.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.211, A:K.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zbinden, K.G. et al., Design of Novel Aminopyrrolidine Factor Xa Inhibitors from a Screening Hit. Eur.J.Med.Chem. (2009)

Release Date

2009-07-07

Peptides

ACTIVATED FACTOR XA HEAVY CHAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ACTIVATED FACTOR XA HEAVY CHAIN

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