SMTL ID : 2vwd.1 (1 other biounit)

Nipah Virus Attachment Glycoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

6 x GBL: GAMMA-BUTYROLACTONE(Non-covalent)

GBL.1: 8 residues within 4Å: Chain A: S.265, L.266, F.330, L.331, C.383, F.384, L.385, I.390 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.330, A:I.390 Hydrogen bonds: A:L.266 GBL.2: 3 residues within 4Å: Chain A: P.141, K.142, S.143 No protein-ligand interaction detected (PLIP) GBL.3: 7 residues within 4Å: Chain A: Y.195, N.199, P.201, C.213, D.251, R.253, L.254 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.254 Hydrogen bonds: A:Y.195 GBL.4: 4 residues within 4Å: Chain A: E.72, L.74, F.84, T.86 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.74, A:F.84 Hydrogen bonds: A:T.86 Salt bridges: A:K.140 GBL.5: 4 residues within 4Å: Chain A: F.276, W.322, E.323, G.324 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.322 GBL.6: 4 residues within 4Å: Chain A: M.85, T.86, N.87, V.88 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.88

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: N.296, W.297, N.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.296, A:W.297 Water bridges: A:R.253, A:N.299 NAG.8: 5 residues within 4Å: Chain A: D.178, T.179, K.233, N.235, S.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.233, A:N.235 Water bridges: A:D.178, A:T.179 NAG.9: 1 residues within 4Å: Chain A: N.347 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.347 Water bridges: A:R.313 NAG.10: 3 residues within 4Å: Chain A: N.196, S.198, N.199 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.198 NAG.11: 4 residues within 4Å: Chain A: V.118, G.119, N.124, Y.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bowden, T.A. et al., Crystal Structure and Carbohydrate Analysis of Nipah Virus Attachment Glycoprotein: A Template for Antiviral and Vaccine Design. J.Virol. (2008)

Release Date

2008-10-07

Peptides

HEMAGGLUTININ-NEURAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HEMAGGLUTININ-NEURAMINIDASE

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