SMTL ID : 2vwd.2 (1 other biounit)

Nipah Virus Attachment Glycoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: S.116, T.117, W.128, S.129 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: R.162, L.188, F.193, K.194 Ligand excluded by PLIP

2 x GBL: GAMMA-BUTYROLACTONE(Non-covalent)

GBL.3: 4 residues within 4Å: Chain A: F.276, W.322, E.323, G.324 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.276, A:W.322 GBL.4: 8 residues within 4Å: Chain A: L.266, F.330, L.331, I.332, C.383, F.384, L.385, I.390 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.266, A:L.385, A:I.390, A:I.390

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: N.196, N.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.199 Water bridges: A:N.196 NAG.6: 3 residues within 4Å: Chain A: V.118, N.124, Y.127 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.124, A:N.124 NAG.7: 6 residues within 4Å: Chain A: D.178, T.179, Y.181, K.233, N.235, S.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.178, A:K.233, A:N.235 Water bridges: A:T.179 NAG.8: 2 residues within 4Å: Chain A: F.314, N.347 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.313, A:F.314 NAG.9: 4 residues within 4Å: Chain A: N.296, W.297, R.298, N.299 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.296, A:W.297 Water bridges: A:N.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bowden, T.A. et al., Crystal Structure and Carbohydrate Analysis of Nipah Virus Attachment Glycoprotein: A Template for Antiviral and Vaccine Design. J.Virol. (2008)

Release Date

2008-10-07

Peptides

HEMAGGLUTININ-NEURAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

HEMAGGLUTININ-NEURAMINIDASE

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