- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-3-1-mer
- Ligands
- 14 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.4: 21 residues within 4Å:- Chain A: N.8, G.9, F.10, G.11, R.12, I.13, N.33, D.34, L.35, E.77, R.78, A.96, T.97, G.98, L.99, T.120, C.150, A.181, N.314, Y.318
- Chain D: P.189
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:I.13, A:Y.318
- Hydrogen bonds: A:F.10, A:R.12, A:I.13, A:N.33, A:R.78, A:N.314
- Water bridges: A:N.8, A:G.11, A:G.14, A:G.98, A:T.120, A:A.181, A:A.181
NAD.9: 21 residues within 4Å:- Chain B: N.8, G.9, F.10, G.11, R.12, I.13, N.33, D.34, L.35, E.77, R.78, A.96, T.97, G.98, L.99, T.120, C.150, A.181, N.314, Y.318
- Chain C: P.189
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:I.13, B:Y.318
- Hydrogen bonds: B:F.10, B:R.12, B:I.13, B:N.33, B:R.78, B:T.120, B:N.314
- Water bridges: B:N.8, B:N.8, B:G.11, B:G.14, B:G.98, B:T.120, B:T.180, B:A.181
NAD.12: 22 residues within 4Å:- Chain B: P.189
- Chain C: N.8, G.9, F.10, G.11, R.12, I.13, N.33, D.34, L.35, E.77, R.78, A.96, T.97, G.98, L.99, F.100, T.120, C.150, A.181, N.314, Y.318
19 PLIP interactions:18 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:I.13, C:Y.318
- Hydrogen bonds: C:F.10, C:R.12, C:I.13, C:N.33, C:R.78, C:N.314
- Water bridges: C:N.8, C:N.8, C:G.11, C:G.14, C:R.15, C:R.78, C:G.98, C:T.120, C:A.181, C:A.181, B:D.187
NAD.18: 23 residues within 4Å:- Chain D: N.7, G.8, F.9, G.10, R.11, I.12, N.31, D.32, P.33, F.34, I.35, C.76, K.77, A.95, T.96, G.97, Y.99, T.119, A.120, C.150, A.181, N.314, Y.318
21 PLIP interactions:20 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:I.12, D:I.12, D:Y.318
- Hydrogen bonds: D:N.7, D:F.9, D:F.9, D:R.11, D:I.12, D:N.31, D:K.77, D:T.119, D:N.314
- Water bridges: D:G.10, D:G.13, D:R.14, D:G.97, D:T.119, D:T.180, D:A.181, A:D.187
- pi-Stacking: D:F.34
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frayne, J. et al., Structure of Insoluble Rat Sperm Glyceraldehyde-3-Phosphate Dehydrogenase (Gapdh) Via Heterotetramer Formation with Escherichia Coli Gapdh Reveals Target for Contraceptive Design. J.Biol.Chem. (2009)
- Release Date
- 2008-08-05
- Peptides
- GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: ABC
GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-3-1-mer
- Ligands
- 14 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Frayne, J. et al., Structure of Insoluble Rat Sperm Glyceraldehyde-3-Phosphate Dehydrogenase (Gapdh) Via Heterotetramer Formation with Escherichia Coli Gapdh Reveals Target for Contraceptive Design. J.Biol.Chem. (2009)
- Release Date
- 2008-08-05
- Peptides
- GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: ABC
GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D