SMTL ID : 2w0q.1

E. COLI COPPER AMINE OXIDASE IN COMPLEX WITH XENON

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.524, H.526, H.689 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.524, A:H.526, A:H.689 CU.10: 3 residues within 4Å: Chain B: H.524, H.526, H.689 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.524, B:H.526, B:H.689

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: K.133, D.533, L.534, D.535, D.678, A.679 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.533, A:L.534, A:D.535, A:D.678, A:A.679, H2O.254 CA.3: 4 residues within 4Å: Chain A: E.573, E.647, Y.667, E.672 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.573, A:Y.667, A:E.672, H2O.290, H2O.294 CA.11: 6 residues within 4Å: Chain B: K.133, D.533, L.534, D.535, D.678, A.679 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.533, B:D.535, B:D.678, B:A.679, H2O.532 CA.12: 3 residues within 4Å: Chain B: E.573, Y.667, E.672 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.573, B:Y.667, B:E.672, H2O.560

11 x XE: XENON(Non-covalent)

XE.4: 5 residues within 4Å: Chain A: V.187, L.188, L.189, F.192, Y.387 No protein-ligand interaction detected (PLIP) XE.5: 4 residues within 4Å: Chain A: M.322, F.330, H.331, T.344 No protein-ligand interaction detected (PLIP) XE.6: 5 residues within 4Å: Chain A: T.223, P.224, Y.381, Y.387, G.464 No protein-ligand interaction detected (PLIP) XE.7: 4 residues within 4Å: Chain A: L.543, A.576, Q.578, L.638 No protein-ligand interaction detected (PLIP) XE.8: 6 residues within 4Å: Chain A: T.393, S.394, I.396, A.426, W.459, I.460 No protein-ligand interaction detected (PLIP) XE.9: 3 residues within 4Å: Chain A: L.543, I.605, L.638 No protein-ligand interaction detected (PLIP) XE.13: 5 residues within 4Å: Chain B: V.187, L.188, L.189, F.192, Y.387 No protein-ligand interaction detected (PLIP) XE.14: 4 residues within 4Å: Chain B: L.543, A.576, Q.578, L.638 No protein-ligand interaction detected (PLIP) XE.15: 2 residues within 4Å: Chain B: F.330, T.344 No protein-ligand interaction detected (PLIP) XE.16: 4 residues within 4Å: Chain A: P.548, V.549, M.563 Chain B: Q.620 No protein-ligand interaction detected (PLIP) XE.17: 6 residues within 4Å: Chain B: F.192, T.223, P.224, Y.381, Y.387, G.464 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pirrat, P. et al., Structure of a Xenon Derivative of Escherichia Coli Copper Amine Oxidase: Confirmation of the Proposed Oxygen-Entry Pathway. Acta Crystallogr.,Sect.F (2008)

Release Date

2008-12-16

Peptides

COPPER AMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COPPER AMINE OXIDASE

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