SMTL ID : 2w4q.1

Crystal structure of human zinc-binding alcohol dehydrogenase 1 (ZADH1) in ternary complex with NADP and 18beta-glycyrrhetinic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: P.51, Y.52, T.140, G.166, A.167, C.168, C.188, G.189, K.193, Y.209, N.232, V.233, C.254, G.255, Q.256, I.257, S.258, Y.260, F.288, L.289, V.290, M.333, M.334, G.336, N.338, G.340 Ligands: CBW.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.140 Hydrogen bonds: A:Y.52, A:A.167, A:C.168, A:G.189, A:K.193, A:N.232, A:C.254, A:Q.256, A:Y.260, A:Y.260, A:V.290, A:N.338, A:N.338 Water bridges: A:G.166, A:G.169, A:G.189, A:Y.209, A:Y.209, A:K.210, A:K.210, A:K.210 Salt bridges: A:K.193

2 x CBW: (3BETA,5BETA,14BETA)-3-HYDROXY-11-OXOOLEAN-12-EN-29-OIC ACID

CBW.2: 14 residues within 4Å: Chain A: Y.52, C.55, Y.65, I.66, F.100, Y.101, C.254, G.255, Q.256, Y.260, Y.266, L.289, L.291 Ligands: NAP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.52, A:Y.52, A:Y.52, A:Y.65, A:I.66, A:Y.260, A:Y.266, A:Y.266, A:L.289, A:L.291 Hydrogen bonds: A:Q.256, A:Y.260 Water bridges: A:Y.52 CBW.3: 10 residues within 4Å: Chain A: T.98, F.100, E.116, K.117, V.118, F.130, G.135, M.136, L.139, E.298 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.100, A:E.116, A:V.118, A:F.130, A:L.139, A:E.298 Hydrogen bonds: A:F.130 Water bridges: A:T.98, A:M.136

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: D.212, N.213, V.214, A.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.213, A:V.214, A:A.215, A:T.240 SO4.5: 4 residues within 4Å: Chain A: T.190, H.191, E.192, N.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.191, A:E.192, A:N.208 Water bridges: A:K.211 SO4.6: 2 residues within 4Å: Chain A: E.286, R.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.287, A:R.287 SO4.7: 2 residues within 4Å: Chain A: A.215, R.219 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shafqat, N. et al., Crystal Structure of Human Zinc-Binding Alcohol Dehydrogenase 1. To be Published

Release Date

2009-01-20

Peptides

PROSTAGLANDIN REDUCTASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROSTAGLANDIN REDUCTASE 2

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