SMTL ID : 2w98.2 (1 other biounit)

CRYSTAL STRUCTURE OF HUMAN ZINC-BINDING ALCOHOL DEHYDROGENASE 1 (ZADH1) IN TERNARY COMPLEX WITH NADP AND PHENYLBUTAZONE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: P.51, T.140, G.166, A.167, C.168, C.188, G.189, K.193, Y.209, N.232, V.233, I.237, C.254, G.255, Q.256, I.257, S.258, Y.260, F.288, L.289, V.290, M.333, M.334, G.336, N.338, G.340 Ligands: P1Z.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:T.140 Hydrogen bonds: A:A.167, A:C.168, A:G.189, A:K.193, A:Y.209, A:N.232, A:C.254, A:Q.256, A:I.257, A:Y.260, A:V.290, A:N.338, A:N.338 Water bridges: A:D.50, A:D.50, A:D.50, A:Y.52, A:G.166, A:G.169, A:G.189, A:K.210, A:K.210, A:K.210, A:I.257, A:S.258, A:M.334, A:K.341 Salt bridges: A:K.193

4 x P1Z: 4-BUTYL-1,2-DIPHENYL-PYRAZOLIDINE-3,5-DIONE(Non-covalent)

P1Z.2: 11 residues within 4Å: Chain A: Y.52, I.66, F.100, C.254, Y.260, Y.266, L.289, V.290, L.291 Ligands: NAP.1, P1Z.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.52, A:Y.52, A:I.66, A:I.66, A:F.100, A:F.100, A:Y.266, A:L.289, A:V.290, A:L.291 Water bridges: A:Y.52, A:R.287 P1Z.3: 6 residues within 4Å: Chain A: Y.65, L.291, N.292, K.294, D.295 Ligands: P1Z.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.294, A:D.295 Hydrogen bonds: A:K.294 pi-Stacking: A:Y.65 P1Z.4: 8 residues within 4Å: Chain A: Y.65, F.100, Y.101, L.291, F.297 Ligands: P1Z.2, P1Z.3, P1Z.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.65, A:F.100, A:F.100, A:L.291, A:L.291, A:F.297 Hydrogen bonds: A:Y.101 P1Z.5: 10 residues within 4Å: Chain A: T.98, E.116, F.130, M.136, K.294, F.297, E.298, I.301 Ligands: P1Z.4, PO4.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.294, A:F.297, A:F.297, A:I.301

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 6 residues within 4Å: Chain A: G.78, T.98, S.99, F.100, M.136 Ligands: P1Z.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.99, A:S.99 PO4.7: 5 residues within 4Å: Chain A: P.103, Q.105, V.108, I.109, L.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.105, A:Q.105, A:I.109, A:I.109

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.8: 3 residues within 4Å: Chain A: F.96, P.120 Ligands: NA.10 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 4 residues within 4Å: Chain A: D.95, F.96, K.117, V.118 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.10: 2 residues within 4Å: Chain A: G.94 Ligands: LMR.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shafqat, N. et al., Crystal Structure of Human Zinc-Binding Alcohol Dehydrogenase 1. To be Published

Release Date

2009-04-07

Peptides

PROSTAGLANDIN REDUCTASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PROSTAGLANDIN REDUCTASE 2

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