SMTL ID : 2w8c.3 (2 other biounits)

Plastocyanin variant with N-terminal Methionine - closed structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

6 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: P.39, H.40, C.90, H.93, M.98 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.40, A:C.90, A:H.93 CU.4: 5 residues within 4Å: Chain B: P.39, H.40, C.90, H.93, M.98 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.40, B:C.90, B:H.93 CU.7: 5 residues within 4Å: Chain C: P.39, H.40, C.90, H.93, M.98 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.40, C:C.90, C:H.93 CU.10: 5 residues within 4Å: Chain D: P.39, H.40, C.90, H.93, M.98 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.40, D:C.90, D:H.93 CU.13: 5 residues within 4Å: Chain E: P.39, H.40, C.90, H.93, M.98 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.40, E:C.90, E:H.93 CU.16: 5 residues within 4Å: Chain F: P.39, H.40, C.90, H.93, M.98 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.40, F:C.90, F:H.93

12 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: D.45, D.46 Chain C: H.62 5 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:H.62, A:D.45, A:D.46, H2O.3, H2O.3 ZN.3: 3 residues within 4Å: Chain A: E.2, H.25, D.28 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.2, A:H.25, A:D.28, A:D.28 ZN.5: 3 residues within 4Å: Chain A: H.62 Chain B: D.45, D.46 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.45, B:D.46, A:H.62, H2O.6, H2O.6 ZN.6: 3 residues within 4Å: Chain B: E.2, H.25, D.28 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.2, B:H.25, B:D.28, B:D.28 ZN.8: 3 residues within 4Å: Chain B: H.62 Chain C: D.45, D.46 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: C:D.45, C:D.46, B:H.62, H2O.9, H2O.9 ZN.9: 3 residues within 4Å: Chain C: E.2, H.25, D.28 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.2, C:H.25, C:D.28, C:D.28 ZN.11: 3 residues within 4Å: Chain D: D.45, D.46 Chain F: H.62 5 PLIP interactions: 1 interactions with chain F, 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: F:H.62, D:D.45, D:D.46, H2O.12, H2O.12 ZN.12: 2 residues within 4Å: Chain D: H.25, E.105 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.25, H2O.12 ZN.14: 3 residues within 4Å: Chain D: H.62 Chain E: D.45, D.46 5 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: E:D.45, E:D.46, D:H.62, H2O.15, H2O.15 ZN.15: 2 residues within 4Å: Chain E: H.25, E.105 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.25, H2O.16 ZN.17: 3 residues within 4Å: Chain E: H.62 Chain F: D.45, D.46 5 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: F:D.45, F:D.46, E:H.62, H2O.19, H2O.19 ZN.18: 2 residues within 4Å: Chain F: H.25, E.105 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.25, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crowley, P.B. et al., Metal-Mediated Self-Assembly of a Beta-Sandwich Protein. Chemistry (2009)

Release Date

2009-10-27

Peptides

PLASTOCYANIN: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

E
B

F
B

PLASTOCYANIN

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