SMTL ID : 2w8o.1 (2 other biounits)

The crystal structure of the reduced form of human SSADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-12-mer

Ligands

96 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: S.237, T.240 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: R.20 Chain C: L.3, S.35, A.37 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.302, K.400 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain A: K.470 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.8 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain A: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.7 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain B: S.237, T.240 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: R.20 Chain I: L.3, S.35, A.37 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: R.302, K.400 Ligand excluded by PLIP SO4.16: 1 residues within 4Å: Chain B: K.470 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain B: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.18 Ligand excluded by PLIP SO4.18: 8 residues within 4Å: Chain B: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.17 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain C: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain C: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain C: S.237, T.240 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain C: R.20 Chain E: L.3, S.35, A.37 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain C: R.302, K.400 Ligand excluded by PLIP SO4.26: 1 residues within 4Å: Chain C: K.470 Ligand excluded by PLIP SO4.27: 6 residues within 4Å: Chain C: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.28 Ligand excluded by PLIP SO4.28: 8 residues within 4Å: Chain C: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.27 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain D: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain D: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.33: 2 residues within 4Å: Chain D: S.237, T.240 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain D: R.20 Chain H: L.3, S.35, A.37 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain D: R.302, K.400 Ligand excluded by PLIP SO4.36: 1 residues within 4Å: Chain D: K.470 Ligand excluded by PLIP SO4.37: 6 residues within 4Å: Chain D: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.38 Ligand excluded by PLIP SO4.38: 8 residues within 4Å: Chain D: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.37 Ligand excluded by PLIP SO4.41: 4 residues within 4Å: Chain E: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain E: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.43: 2 residues within 4Å: Chain E: S.237, T.240 Ligand excluded by PLIP SO4.44: 4 residues within 4Å: Chain A: L.3, S.35, A.37 Chain E: R.20 Ligand excluded by PLIP SO4.45: 2 residues within 4Å: Chain E: R.302, K.400 Ligand excluded by PLIP SO4.46: 1 residues within 4Å: Chain E: K.470 Ligand excluded by PLIP SO4.47: 6 residues within 4Å: Chain E: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.48 Ligand excluded by PLIP SO4.48: 8 residues within 4Å: Chain E: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.47 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain F: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain F: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.53: 2 residues within 4Å: Chain F: S.237, T.240 Ligand excluded by PLIP SO4.54: 4 residues within 4Å: Chain F: R.20 Chain K: L.3, S.35, A.37 Ligand excluded by PLIP SO4.55: 2 residues within 4Å: Chain F: R.302, K.400 Ligand excluded by PLIP SO4.56: 1 residues within 4Å: Chain F: K.470 Ligand excluded by PLIP SO4.57: 6 residues within 4Å: Chain F: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.58 Ligand excluded by PLIP SO4.58: 8 residues within 4Å: Chain F: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.57 Ligand excluded by PLIP SO4.61: 4 residues within 4Å: Chain G: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.62: 4 residues within 4Å: Chain G: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.63: 2 residues within 4Å: Chain G: S.237, T.240 Ligand excluded by PLIP SO4.64: 4 residues within 4Å: Chain B: L.3, S.35, A.37 Chain G: R.20 Ligand excluded by PLIP SO4.65: 2 residues within 4Å: Chain G: R.302, K.400 Ligand excluded by PLIP SO4.66: 1 residues within 4Å: Chain G: K.470 Ligand excluded by PLIP SO4.67: 6 residues within 4Å: Chain G: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.68 Ligand excluded by PLIP SO4.68: 8 residues within 4Å: Chain G: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.67 Ligand excluded by PLIP SO4.71: 4 residues within 4Å: Chain H: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.72: 4 residues within 4Å: Chain H: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.73: 2 residues within 4Å: Chain H: S.237, T.240 Ligand excluded by PLIP SO4.74: 4 residues within 4Å: Chain H: R.20 Chain L: L.3, S.35, A.37 Ligand excluded by PLIP SO4.75: 2 residues within 4Å: Chain H: R.302, K.400 Ligand excluded by PLIP SO4.76: 1 residues within 4Å: Chain H: K.470 Ligand excluded by PLIP SO4.77: 6 residues within 4Å: Chain H: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.78 Ligand excluded by PLIP SO4.78: 8 residues within 4Å: Chain H: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.77 Ligand excluded by PLIP SO4.81: 4 residues within 4Å: Chain I: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.82: 4 residues within 4Å: Chain I: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.83: 2 residues within 4Å: Chain I: S.237, T.240 Ligand excluded by PLIP SO4.84: 4 residues within 4Å: Chain G: L.3, S.35, A.37 Chain I: R.20 Ligand excluded by PLIP SO4.85: 2 residues within 4Å: Chain I: R.302, K.400 Ligand excluded by PLIP SO4.86: 1 residues within 4Å: Chain I: K.470 Ligand excluded by PLIP SO4.87: 6 residues within 4Å: Chain I: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.88 Ligand excluded by PLIP SO4.88: 8 residues within 4Å: Chain I: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.87 Ligand excluded by PLIP SO4.91: 4 residues within 4Å: Chain J: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.92: 4 residues within 4Å: Chain J: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.93: 2 residues within 4Å: Chain J: S.237, T.240 Ligand excluded by PLIP SO4.94: 4 residues within 4Å: Chain F: L.3, S.35, A.37 Chain J: R.20 Ligand excluded by PLIP SO4.95: 2 residues within 4Å: Chain J: R.302, K.400 Ligand excluded by PLIP SO4.96: 1 residues within 4Å: Chain J: K.470 Ligand excluded by PLIP SO4.97: 6 residues within 4Å: Chain J: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.98 Ligand excluded by PLIP SO4.98: 8 residues within 4Å: Chain J: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.97 Ligand excluded by PLIP SO4.101: 4 residues within 4Å: Chain K: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.102: 4 residues within 4Å: Chain K: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.103: 2 residues within 4Å: Chain K: S.237, T.240 Ligand excluded by PLIP SO4.104: 4 residues within 4Å: Chain J: L.3, S.35, A.37 Chain K: R.20 Ligand excluded by PLIP SO4.105: 2 residues within 4Å: Chain K: R.302, K.400 Ligand excluded by PLIP SO4.106: 1 residues within 4Å: Chain K: K.470 Ligand excluded by PLIP SO4.107: 6 residues within 4Å: Chain K: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.108 Ligand excluded by PLIP SO4.108: 8 residues within 4Å: Chain K: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.107 Ligand excluded by PLIP SO4.111: 4 residues within 4Å: Chain L: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.112: 4 residues within 4Å: Chain L: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.113: 2 residues within 4Å: Chain L: S.237, T.240 Ligand excluded by PLIP SO4.114: 4 residues within 4Å: Chain D: L.3, S.35, A.37 Chain L: R.20 Ligand excluded by PLIP SO4.115: 2 residues within 4Å: Chain L: R.302, K.400 Ligand excluded by PLIP SO4.116: 1 residues within 4Å: Chain L: K.470 Ligand excluded by PLIP SO4.117: 6 residues within 4Å: Chain L: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.118 Ligand excluded by PLIP SO4.118: 8 residues within 4Å: Chain L: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.117 Ligand excluded by PLIP

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 3 residues within 4Å: Chain A: V.359, T.360, G.361 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain A: N.337, N.370 Chain E: R.48, A.52, R.55 Ligand excluded by PLIP GOL.19: 3 residues within 4Å: Chain B: V.359, T.360, G.361 Ligand excluded by PLIP GOL.20: 5 residues within 4Å: Chain B: N.337, N.370 Chain G: R.48, A.52, R.55 Ligand excluded by PLIP GOL.29: 3 residues within 4Å: Chain C: V.359, T.360, G.361 Ligand excluded by PLIP GOL.30: 5 residues within 4Å: Chain A: R.48, A.52, R.55 Chain C: N.337, N.370 Ligand excluded by PLIP GOL.39: 3 residues within 4Å: Chain D: V.359, T.360, G.361 Ligand excluded by PLIP GOL.40: 5 residues within 4Å: Chain D: N.337, N.370 Chain L: R.48, A.52, R.55 Ligand excluded by PLIP GOL.49: 3 residues within 4Å: Chain E: V.359, T.360, G.361 Ligand excluded by PLIP GOL.50: 5 residues within 4Å: Chain C: R.48, A.52, R.55 Chain E: N.337, N.370 Ligand excluded by PLIP GOL.59: 3 residues within 4Å: Chain F: V.359, T.360, G.361 Ligand excluded by PLIP GOL.60: 5 residues within 4Å: Chain F: N.337, N.370 Chain J: R.48, A.52, R.55 Ligand excluded by PLIP GOL.69: 3 residues within 4Å: Chain G: V.359, T.360, G.361 Ligand excluded by PLIP GOL.70: 5 residues within 4Å: Chain G: N.337, N.370 Chain I: R.48, A.52, R.55 Ligand excluded by PLIP GOL.79: 3 residues within 4Å: Chain H: V.359, T.360, G.361 Ligand excluded by PLIP GOL.80: 5 residues within 4Å: Chain D: R.48, A.52, R.55 Chain H: N.337, N.370 Ligand excluded by PLIP GOL.89: 3 residues within 4Å: Chain I: V.359, T.360, G.361 Ligand excluded by PLIP GOL.90: 5 residues within 4Å: Chain B: R.48, A.52, R.55 Chain I: N.337, N.370 Ligand excluded by PLIP GOL.99: 3 residues within 4Å: Chain J: V.359, T.360, G.361 Ligand excluded by PLIP GOL.100: 5 residues within 4Å: Chain J: N.337, N.370 Chain K: R.48, A.52, R.55 Ligand excluded by PLIP GOL.109: 3 residues within 4Å: Chain K: V.359, T.360, G.361 Ligand excluded by PLIP GOL.110: 5 residues within 4Å: Chain F: R.48, A.52, R.55 Chain K: N.337, N.370 Ligand excluded by PLIP GOL.119: 3 residues within 4Å: Chain L: V.359, T.360, G.361 Ligand excluded by PLIP GOL.120: 5 residues within 4Å: Chain H: R.48, A.52, R.55 Chain L: N.337, N.370 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y.-G. et al., Redox-Switch Modulation of Human Ssadh by Dynamic Catalytic Loop. Embo J. (2009)

Release Date

2009-06-09

Peptides

SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL

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