SMTL ID : 2w8o.2 (2 other biounits)

The crystal structure of the reduced form of human SSADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-tetramer

Ligands

32 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: S.237, T.240 Ligand excluded by PLIP SO4.4: 1 residues within 4Å: Chain A: R.20 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.302, K.400 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: K.470 Chain B: Y.127 Ligands: SO4.16 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.8 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain A: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.7 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain B: S.237, T.240 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain B: R.20 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: R.302, K.400 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain A: Y.127 Chain B: K.470 Ligands: SO4.6 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain B: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.18 Ligand excluded by PLIP SO4.18: 8 residues within 4Å: Chain B: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.17 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain C: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain C: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain C: S.237, T.240 Ligand excluded by PLIP SO4.24: 1 residues within 4Å: Chain C: R.20 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain C: R.302, K.400 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: K.470 Chain D: Y.127 Ligands: SO4.36 Ligand excluded by PLIP SO4.27: 6 residues within 4Å: Chain C: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.28 Ligand excluded by PLIP SO4.28: 8 residues within 4Å: Chain C: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.27 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain D: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain D: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.33: 2 residues within 4Å: Chain D: S.237, T.240 Ligand excluded by PLIP SO4.34: 1 residues within 4Å: Chain D: R.20 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain D: R.302, K.400 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain C: Y.127 Chain D: K.470 Ligands: SO4.26 Ligand excluded by PLIP SO4.37: 6 residues within 4Å: Chain D: G.107, Y.111, F.158, R.286, S.450 Ligands: SO4.38 Ligand excluded by PLIP SO4.38: 8 residues within 4Å: Chain D: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.37 Ligand excluded by PLIP

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 3 residues within 4Å: Chain A: V.359, T.360, G.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.359, A:G.361 GOL.10: 2 residues within 4Å: Chain A: N.337, N.370 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.338, A:N.370 GOL.19: 3 residues within 4Å: Chain B: V.359, T.360, G.361 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.359, B:G.361 GOL.20: 2 residues within 4Å: Chain B: N.337, N.370 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.338, B:N.370 GOL.29: 3 residues within 4Å: Chain C: V.359, T.360, G.361 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.359, C:G.361 GOL.30: 2 residues within 4Å: Chain C: N.337, N.370 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.338, C:N.370 GOL.39: 3 residues within 4Å: Chain D: V.359, T.360, G.361 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:V.359, D:G.361 GOL.40: 2 residues within 4Å: Chain D: N.337, N.370 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.338, D:N.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y.-G. et al., Redox-Switch Modulation of Human Ssadh by Dynamic Catalytic Loop. Embo J. (2009)

Release Date

2009-06-09

Peptides

SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL

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