SMTL ID : 2w8p.2 (2 other biounits)

The crystal structure of human C340A SSADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

32 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: F.234, S.237, T.240 Ligand excluded by PLIP SO4.4: 1 residues within 4Å: Chain A: R.20 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.302, K.400 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain B: Y.127 Ligands: SO4.17 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain A: G.107, E.108, Y.111, F.158, R.286, S.450 Ligands: GOL.9 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: G.19, R.20, W.21 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: F.234, S.237, T.240 Ligand excluded by PLIP SO4.15: 1 residues within 4Å: Chain B: R.20 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: R.302, K.400 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain A: Y.127 Ligands: SO4.6 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain B: G.107, E.108, Y.111, F.158, R.286, S.450 Ligands: GOL.20 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain B: G.19, R.20, W.21 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain C: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: F.234, S.237, T.240 Ligand excluded by PLIP SO4.26: 1 residues within 4Å: Chain C: R.20 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain C: R.302, K.400 Ligand excluded by PLIP SO4.28: 2 residues within 4Å: Chain D: Y.127 Ligands: SO4.39 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain C: G.107, E.108, Y.111, F.158, R.286, S.450 Ligands: GOL.31 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain C: G.19, R.20, W.21 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain D: L.320, R.321, V.322, H.365 Ligand excluded by PLIP SO4.35: 4 residues within 4Å: Chain D: Q.301, D.402, T.403, E.404 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain D: F.234, S.237, T.240 Ligand excluded by PLIP SO4.37: 1 residues within 4Å: Chain D: R.20 Ligand excluded by PLIP SO4.38: 2 residues within 4Å: Chain D: R.302, K.400 Ligand excluded by PLIP SO4.39: 2 residues within 4Å: Chain C: Y.127 Ligands: SO4.28 Ligand excluded by PLIP SO4.40: 7 residues within 4Å: Chain D: G.107, E.108, Y.111, F.158, R.286, S.450 Ligands: GOL.42 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain D: G.19, R.20, W.21 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 8 residues within 4Å: Chain A: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.165, A:R.286, A:R.286 GOL.10: 3 residues within 4Å: Chain A: T.360, G.361, K.363 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.360, A:G.361 GOL.11: 2 residues within 4Å: Chain A: N.337, E.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.338 Water bridges: A:N.370 GOL.20: 8 residues within 4Å: Chain B: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.18 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.165, B:R.286, B:R.286 GOL.21: 3 residues within 4Å: Chain B: T.360, G.361, K.363 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.361 GOL.22: 2 residues within 4Å: Chain B: N.337, E.338 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.338 Water bridges: B:N.370 GOL.31: 8 residues within 4Å: Chain C: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.29 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.165, C:R.286, C:R.286 GOL.32: 3 residues within 4Å: Chain C: T.360, G.361, K.363 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.361 GOL.33: 2 residues within 4Å: Chain C: N.337, E.338 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.338 Water bridges: C:N.370 GOL.42: 8 residues within 4Å: Chain D: Y.111, F.158, R.165, R.286, V.293, S.450, F.456 Ligands: SO4.40 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.165, D:R.286, D:R.286 GOL.43: 3 residues within 4Å: Chain D: T.360, G.361, K.363 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.360, D:G.361 GOL.44: 2 residues within 4Å: Chain D: N.337, E.338 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.338 Water bridges: D:N.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y.-G. et al., Redox-Switch Modulation of Human Ssadh by Dynamic Catalytic Loop. Embo J. (2009)

Release Date

2009-06-09

Peptides

SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

SUCCINIC SEMIALDEHYDE DEHYDROGENASE MITOCHONDRIAL

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