SMTL ID : 2wbj.2 (1 other biounit)

TCR complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 7 residues within 4Å: Chain A: V.116, N.118, E.166, H.167, W.168 Chain B: T.3, R.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.3, B:T.3, B:T.3

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.78 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: N.19, E.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.22, B:E.22

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain B: R.23, V.24, V.75, R.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.24 Salt bridges: B:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harkiolaki, M. et al., T Cell-Mediated Autoimmune Disease due to Low-Affinity Crossreactivity to Common Microbial Peptides. Immunity (2009)

Release Date

2009-04-07

Peptides

HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-15 BETA CHAIN: B
OB TCR: C
OB TCR: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN

HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-15 BETA CHAIN

OB TCR

OB TCR

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