SMTL ID : 2wex.1

Crystal structure of human apoM in complex with glycerol 1- myristic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GYM: (2R)-2,3-dihydroxypropyl tetradecanoate

GYM.1: 16 residues within 4Å: Chain A: F.23, P.24, H.27, W.31, F.33, F.47, I.53, F.55, M.57, L.68, W.84, Y.86, L.107, L.118, E.120, Y.131 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.23, A:P.24, A:H.27, A:W.31, A:F.55, A:F.55, A:L.68, A:L.107, A:L.118, A:Y.131, A:Y.131 Hydrogen bonds: A:Y.131 Salt bridges: A:R.127

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sevvana, M. et al., Serendipitous Fatty Acid Binding Reveals the Structural Determinants for Ligand Recognition in Apolipoprotein M. J.Mol.Biol. (2009)

Release Date

2009-09-15

Peptides

APOLIPOPROTEIN M: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

APOLIPOPROTEIN M

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