SMTL ID : 2wlc.1

CRYSTALLOGRAPHIC ANALYSIS OF THE POLYSIALIC ACID O-ACETYLTRANSFERASE OATWY

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

9 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: N.42, D.63, D.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.42, A:D.64 ACT.2: 2 residues within 4Å: Chain A: H.111, N.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.149, A:N.149 Salt bridges: A:H.111 ACT.3: 3 residues within 4Å: Chain A: H.75, A.96, E.97 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.96, A:E.97 Hydrogen bonds: A:E.97 Water bridges: A:S.76 Salt bridges: A:H.75 ACT.14: 3 residues within 4Å: Chain B: N.42, D.63, D.64 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.42, B:D.64 ACT.15: 2 residues within 4Å: Chain B: H.111, N.149 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.149, B:N.149 Salt bridges: B:H.111 ACT.16: 3 residues within 4Å: Chain B: H.75, A.96, E.97 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.96, B:E.97 Hydrogen bonds: B:E.97 Water bridges: B:S.76 Salt bridges: B:H.75 ACT.27: 3 residues within 4Å: Chain C: N.42, D.63, D.64 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.42, C:D.63, C:D.64 ACT.28: 2 residues within 4Å: Chain C: H.111, N.149 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.149, C:N.149 Salt bridges: C:H.111 ACT.29: 3 residues within 4Å: Chain C: H.75, A.96, E.97 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:A.96, C:E.97 Hydrogen bonds: C:E.97 Water bridges: C:S.76 Salt bridges: C:H.75

15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: Q.81, Q.83, S.102, I.103, G.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.81, A:Q.83, A:I.103 EDO.5: 3 residues within 4Å: Chain A: V.189, K.190, E.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.189, A:E.191, A:E.191 EDO.6: 2 residues within 4Å: Chain A: H.4 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.4 EDO.7: 3 residues within 4Å: Chain A: H.4, T.19 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.4 Water bridges: A:I.17 EDO.13: 8 residues within 4Å: Chain A: D.119 Chain C: W.145, G.147, V.163, V.164, G.165, S.166 Ligands: PO4.9 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:S.166 Water bridges: A:D.119, A:D.119 EDO.17: 5 residues within 4Å: Chain B: Q.81, Q.83, S.102, I.103, G.104 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.81, B:Q.83, B:I.103 EDO.18: 3 residues within 4Å: Chain B: V.189, K.190, E.191 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.189, B:E.191, B:E.191, B:E.191 EDO.19: 2 residues within 4Å: Chain B: H.4 Ligands: EDO.20 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.4 EDO.20: 3 residues within 4Å: Chain B: H.4, T.19 Ligands: EDO.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.4 Water bridges: B:I.17 EDO.26: 8 residues within 4Å: Chain A: W.145, G.147, V.163, V.164, G.165, S.166 Chain B: D.119 Ligands: PO4.22 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:D.119, B:D.119 Hydrogen bonds: A:S.166 EDO.30: 5 residues within 4Å: Chain C: Q.81, Q.83, S.102, I.103, G.104 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.81, C:Q.83, C:I.103 EDO.31: 3 residues within 4Å: Chain C: V.189, K.190, E.191 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.189, C:E.191, C:E.191 EDO.32: 2 residues within 4Å: Chain C: H.4 Ligands: EDO.33 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.4, C:H.4 EDO.33: 3 residues within 4Å: Chain C: H.4, T.19 Ligands: EDO.32 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.4 Water bridges: C:I.17 EDO.39: 8 residues within 4Å: Chain B: W.145, G.147, V.163, V.164, G.165, S.166 Chain C: D.119 Ligands: PO4.35 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Water bridges: C:D.119, C:D.119 Hydrogen bonds: B:S.166

15 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.8: 5 residues within 4Å: Chain A: M.120, H.121 Chain C: A.110, R.148 Ligands: PO4.9 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Water bridges: C:H.111 Salt bridges: C:R.148, A:H.121 PO4.9: 9 residues within 4Å: Chain A: R.116, D.119 Chain C: A.110, W.145, G.147, R.148, S.166 Ligands: PO4.8, EDO.13 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Salt bridges: A:R.116 Hydrogen bonds: C:W.145, C:R.148 PO4.10: 4 residues within 4Å: Chain A: M.68, G.89, N.90, H.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.68, A:N.90 Water bridges: A:H.111 Salt bridges: A:H.111 PO4.11: 6 residues within 4Å: Chain A: D.106, H.143, G.196, R.197, T.209, L.210 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.106, A:R.197, A:D.207, A:T.209, A:T.209 Salt bridges: A:H.143, A:R.197 PO4.12: 2 residues within 4Å: Chain A: N.56, D.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.56, A:D.77, A:D.77 Water bridges: A:N.55 Salt bridges: A:K.98 PO4.21: 5 residues within 4Å: Chain A: A.110, R.148 Chain B: M.120, H.121 Ligands: PO4.22 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:H.111 Salt bridges: A:R.148, B:H.121 PO4.22: 9 residues within 4Å: Chain A: A.110, W.145, G.147, R.148, S.166 Chain B: R.116, D.119 Ligands: PO4.21, EDO.26 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.145, A:R.148 Salt bridges: B:R.116 PO4.23: 4 residues within 4Å: Chain B: M.68, G.89, N.90, H.111 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.68, B:N.90 Water bridges: B:H.111 Salt bridges: B:H.111 PO4.24: 6 residues within 4Å: Chain B: D.106, H.143, G.196, R.197, T.209, L.210 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.106, B:R.197, B:D.207, B:T.209, B:T.209 Salt bridges: B:H.143, B:R.197 PO4.25: 2 residues within 4Å: Chain B: N.56, D.77 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.56, B:D.77, B:D.77 Water bridges: B:N.55 Salt bridges: B:K.98 PO4.34: 5 residues within 4Å: Chain B: A.110, R.148 Chain C: M.120, H.121 Ligands: PO4.35 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Water bridges: B:H.111 Salt bridges: B:R.148, C:H.121 PO4.35: 9 residues within 4Å: Chain B: A.110, W.145, G.147, R.148, S.166 Chain C: R.116, D.119 Ligands: PO4.34, EDO.39 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:W.145, B:R.148 Salt bridges: C:R.116 PO4.36: 4 residues within 4Å: Chain C: M.68, G.89, N.90, H.111 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:M.68, C:N.90 Water bridges: C:H.111 Salt bridges: C:H.111 PO4.37: 6 residues within 4Å: Chain C: D.106, H.143, G.196, R.197, T.209, L.210 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:D.106, C:R.197, C:D.207, C:T.209, C:T.209 Salt bridges: C:H.143, C:R.197 PO4.38: 2 residues within 4Å: Chain C: N.56, D.77 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.56, C:D.77, C:D.77 Water bridges: C:N.55 Salt bridges: C:K.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.J. et al., Structural and Kinetic Characterizations of the Polysialic Acid O-Acetyltransferase Oatwy from Neisseria Meningitidis. J.Biol.Chem. (2009)

Release Date

2009-06-30

Peptides

POLYSIALIC ACID O-ACETYLTRANSFERASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

POLYSIALIC ACID O-ACETYLTRANSFERASE

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