SMTL ID : 2wmd.1

Crystal structure of NmrA-like family domain containing protein 1 in complex with NADP and 2-(4-chloro-phenylamino)-nicotinic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZZ0: 2-(4-CHLORO-PHENYLAMINO)-NICOTINIC ACID(Non-covalent)

ZZ0.1: 13 residues within 4Å: Chain A: W.83, L.115, H.130, C.155, N.159, H.163, F.164, Y.247, L.258, M.261, Y.265 Chain B: F.252 Ligands: NAP.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.163, A:F.164, A:L.258, A:L.258 Hydrogen bonds: A:N.159 Salt bridges: A:H.130 pi-Stacking: A:H.163 ZZ0.3: 13 residues within 4Å: Chain A: F.252 Chain B: W.83, L.115, H.130, C.155, N.159, H.163, F.164, Y.247, L.258, M.261, Y.265 Ligands: NAP.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:H.163, B:F.164, B:L.258, B:L.258 Hydrogen bonds: B:N.159 Salt bridges: B:H.130 pi-Stacking: B:H.163

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 25 residues within 4Å: Chain A: G.12, T.14, G.15, A.16, Q.17, T.37, R.38, K.42, G.58, D.59, Q.60, V.79, T.80, N.81, Y.82, W.83, E.91, Q.94, K.134, L.153, P.154, C.155, Y.156, N.159 Ligands: ZZ0.1 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:L.153, A:Y.156 Hydrogen bonds: A:G.12, A:T.14, A:T.14, A:T.14, A:A.16, A:Q.17, A:Q.17, A:T.37, A:T.37, A:R.38, A:D.59, A:Q.60, A:T.80, A:Y.82, A:W.83, A:Q.94, A:K.134, A:Y.156, A:Y.156, A:N.159, A:N.159 Water bridges: A:G.12, A:G.12, A:T.14, A:G.18, A:R.38, A:R.38, A:K.42, A:K.42, A:N.81, A:N.81, A:N.81, A:N.81 Salt bridges: A:R.38, A:K.42 pi-Cation interactions: A:R.38 NAP.4: 25 residues within 4Å: Chain B: G.12, T.14, G.15, A.16, Q.17, T.37, R.38, K.42, G.58, D.59, Q.60, V.79, T.80, N.81, Y.82, W.83, E.91, Q.94, K.134, L.153, P.154, C.155, Y.156, N.159 Ligands: ZZ0.3 37 PLIP interactions: 37 interactions with chain B Hydrophobic interactions: B:L.153, B:Y.156 Hydrogen bonds: B:G.12, B:T.14, B:T.14, B:T.14, B:A.16, B:Q.17, B:Q.17, B:T.37, B:R.38, B:D.59, B:Q.60, B:T.80, B:Y.82, B:W.83, B:Q.94, B:K.134, B:Y.156, B:Y.156, B:N.159, B:N.159 Water bridges: B:G.12, B:G.12, B:T.14, B:G.18, B:R.38, B:K.42, B:K.42, B:N.81, B:N.81, B:N.81, B:N.81, B:N.81 Salt bridges: B:R.38, B:K.42 pi-Cation interactions: B:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhatia, C. et al., Crystal Structure of Nmra-Like Family Domain Containing Protein 1. To be Published

Release Date

2009-07-28

Peptides

NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1

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