SMTL ID : 2wt0.1

Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with N-acetyl-lactosamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL.1: 10 residues within 4Å: Chain A: H.75, N.77, R.79, V.89, N.91, W.99, E.102, R.104, Y.225, D.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79, A:N.91, A:E.102, A:Y.225, A:Y.225, A:D.226, A:R.79, A:R.79, A:R.104 Water bridges: A:Y.225, A:D.226, A:E.102

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 7 residues within 4Å: Chain A: T.55, P.56, S.57, D.186, A.187, Y.188, V.189 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.55, A:S.57, A:A.187, A:Y.188, A:V.189 Water bridges: A:D.186, A:V.189 NO3.3: 7 residues within 4Å: Chain A: I.32, P.33, F.34, V.35, T.209, P.210, L.211 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.34, A:V.35, A:T.209, A:T.209, A:L.211 NO3.4: 7 residues within 4Å: Chain A: N.218, V.220, L.223, H.224, S.227, H.310, F.312 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.218, A:H.224, A:H.310 NO3.5: 5 residues within 4Å: Chain A: R.79, P.81, H.87, H.224, Y.225 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.225 Water bridges: A:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardado-Calvo, P. et al., Crystallographic structure of porcine adenovirus type 4 fiber head and galectin domains. J. Virol. (2010)

Release Date

2010-08-11

Peptides

PUTATIVE FIBER PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE FIBER PROTEIN

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