SMTL ID : 2wt2.1 (1 other biounit)

Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with tri(N-acetyl-lactosamine)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- GAL- NAG- GAL- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-NAG-GAL-NAG-GAL.1: 21 residues within 4Å: Chain A: T.62, D.64, V.66, A.70, L.72, H.75, N.77, R.79, V.89, N.91, R.93, W.99, E.102, R.104, A.212, E.213, F.214, I.216, Y.225, F.238, R.269 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.213, A:R.269, A:R.269, A:R.93 Hydrophobic interactions: A:V.66, A:L.72

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 7 residues within 4Å: Chain A: I.32, P.33, F.34, V.35, T.209, P.210, L.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.34, A:V.35, A:L.211 NO3.3: 7 residues within 4Å: Chain A: T.55, P.56, S.57, D.186, A.187, Y.188, V.189 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.55, A:T.55, A:S.57, A:D.186, A:A.187, A:Y.188, A:V.189, A:V.189 NO3.4: 8 residues within 4Å: Chain A: N.218, V.220, D.222, L.223, H.224, S.227, H.310, F.312 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.218, A:D.222, A:H.224, A:H.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardado-Calvo, P. et al., Crystallographic structure of porcine adenovirus type 4 fiber head and galectin domains. J. Virol. (2010)

Release Date

2010-08-11

Peptides

PUTATIVE FIBER PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE FIBER PROTEIN

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