SMTL ID : 2wv8.1

Complex of human dihydroorotate dehydrogenase with the inhibitor 221290

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 25 residues within 4Å: Chain A: A.64, A.65, G.66, K.69, G.88, S.89, N.114, Y.116, N.150, N.181, K.224, T.252, N.253, T.254, S.274, G.275, L.278, V.302, G.303, G.304, L.324, Y.325, T.326 Ligands: ORO.2, VGN.3 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:N.114, A:Y.116, A:Y.325, A:Y.325 Hydrogen bonds: A:A.65, A:K.69, A:S.89, A:S.89, A:N.150, A:K.224, A:K.224, A:K.224, A:N.253, A:S.274, A:G.275, A:G.304, A:Y.325, A:T.326 Water bridges: A:A.65, A:G.303, A:V.305, A:V.305, A:A.327

1 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 13 residues within 4Å: Chain A: K.69, N.114, R.115, Y.116, G.117, F.118, N.181, S.184, P.185, N.186, N.253, T.254 Ligands: FMN.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.118 Hydrogen bonds: A:N.114, A:N.114, A:N.114, A:Y.116, A:G.117, A:F.118, A:N.181, A:N.186, A:N.253, A:N.253, A:T.254 Water bridges: A:S.184, A:S.184 Salt bridges: A:K.69

1 x VGN: 2-ACETAMIDO-5-(4-PHENYLPHENYL)BENZOIC ACID(Non-covalent)

VGN.3: 19 residues within 4Å: Chain A: Y.7, M.12, L.15, Q.16, P.21, A.24, H.25, A.28, L.36, L.37, P.38, F.67, V.103, R.105, Y.325, T.329, P.333 Ligands: FMN.1, DDQ.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.7, A:L.15, A:A.24, A:A.28, A:L.37, A:F.67, A:V.103, A:T.329, A:P.333 Hydrogen bonds: A:Q.16, A:Y.325 Salt bridges: A:R.105

1 x DDQ: DECYLAMINE-N,N-DIMETHYL-N-OXIDE(Non-covalent)

DDQ.4: 7 residues within 4Å: Chain A: Y.7, L.27, F.31, L.36, L.37, P.38 Ligands: VGN.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.27, A:F.31, A:F.31

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 4 residues within 4Å: Chain A: D.280, T.283, Q.284, R.287 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.280, A:Q.284 Salt bridges: A:R.287

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: R.214, V.216, H.217 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.214, A:H.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fritzson, I. et al., Inhibition of Human Dhodh by 4-Hydroxycoumarins, Fenamic Acids, and N-(Alkylcarbonyl)Anthranilic Acids Identified by Structure-Guided Fragment Selection. Chemmedchem (2010)

Release Date

2010-08-25

Peptides

DIHYDROOROTATE DEHYDROGENASE, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DIHYDROOROTATE DEHYDROGENASE, MITOCHONDRIAL

Related Entries With Identical Sequence