SMTL ID : 2wvu.2 (3 other biounits)

Crystal structure of a Michaelis complex of alpha-L-fucosidase GH29 from Bacteroides thetaiotaomicron with the synthetic substrate 4- nitrophenyl-alpha-L-fucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: W.202, R.232, R.241, H.242 Ligands: JFZ.3 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.232, A:R.241, A:H.242 SO4.2: 7 residues within 4Å: Chain A: A.33, I.35, W.87, M.90, A.91, Y.138, F.329 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.138

1 x JFZ: 4-nitrophenyl 6-deoxy-alpha-L-galactopyranoside(Non-covalent)

JFZ.3: 14 residues within 4Å: Chain A: H.36, E.57, W.58, H.105, H.106, Y.148, W.197, D.199, W.202, R.232, E.258, R.259, W.286 Ligands: SO4.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.197, A:E.258, A:W.286 Hydrogen bonds: A:E.57, A:H.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammerts Van Bueren, A. et al., Analysis of the Reaction Coordinate of Alpha-L-Fucosidases: A Combined Structural and Quantum Mechanical Approach. J.Am.Chem.Soc. (2010)

Release Date

2010-02-02

Peptides

ALPHA-L-FUCOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

ALPHA-L-FUCOSIDASE

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