SMTL ID : 2wvx.1 (3 other biounits)

STRUCTURE OF THE FAMILY GH92 INVERTING MANNOSIDASE BT3990 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.514, G.581, Q.583, D.625 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.514, A:G.581, A:D.625, H2O.369, H2O.448

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: S.67, W.69, I.70, D.329, W.366, C.374, M.375 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.67, A:S.67, A:D.329 GOL.3: 5 residues within 4Å: Chain A: Q.265, K.269, Y.342, V.345, E.665 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.265, A:K.269, A:E.665, A:E.665 GOL.4: 7 residues within 4Å: Chain A: G.274, G.275, Q.279, R.606, L.656, N.677, S.678 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.276, A:Q.279, A:Q.279, A:N.677 Water bridges: A:R.606, A:T.679 GOL.5: 5 residues within 4Å: Chain A: Y.106, Y.107, I.252, E.253, A.256 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.253, A:E.253 Water bridges: A:Y.106, A:Y.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Y. et al., Mechanistic Insights Into a Ca2+-Dependent Family of A-Mannosidases in a Human Gut Symbiont. Nat.Chem.Biol. (2010)

Release Date

2009-11-03

Peptides

PUTATIVE ALPHA-1,2-MANNOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE ALPHA-1,2-MANNOSIDASE

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