SMTL ID : 2ww3.6 (5 other biounits)

Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482 in complex with thiomannobioside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x Z5L- MAN: alpha-D-mannopyranose-(1-2)-methyl 2-thio-alpha-D-mannopyranoside(Non-covalent)

Z5L-MAN.1: 17 residues within 4Å: Chain A: S.67, W.69, I.70, W.328, D.329, W.366, C.374, M.375, E.514, Y.560, I.564, H.565, E.566, Q.583, D.623, D.625 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.67, A:S.67, A:D.329, A:Q.583, A:D.623, A:W.69, A:H.565 Water bridges: A:Q.583, A:D.625

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.329, Q.583, D.623, D.625 Ligands: Z5L-MAN.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.625, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Y. et al., Mechanistic Insights Into a Ca(2+)-Dependent Family of Alpha-Mannosidases in a Human Gut Symbiont. Nat.Chem.Biol. (2010)

Release Date

2010-01-26

Peptides

PUTATIVE ALPHA-1,2-MANNOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

PUTATIVE ALPHA-1,2-MANNOSIDASE

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