- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DGP: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 12 residues within 4Å:- Chain A: R.20, S.21, G.22, K.23, S.24, T.25, R.147, S.148, R.184, I.186, I.189
- Ligands: NA.3
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:R.20, A:S.21, A:G.22, A:K.23, A:S.24, A:T.25, A:R.147, A:S.148, A:S.148, A:R.184
- Water bridges: A:K.23, A:K.23, A:K.23, A:K.23, A:S.24
- Salt bridges: A:K.23
- pi-Cation interactions: A:R.147, A:R.147
ADP.14: 12 residues within 4Å:- Chain B: R.20, S.21, G.22, K.23, S.24, T.25, R.147, S.148, R.184, I.186, I.189
- Ligands: NA.15
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:R.20, B:S.21, B:G.22, B:K.23, B:S.24, B:T.25, B:T.25, B:R.147, B:S.148, B:S.148, B:R.184
- Water bridges: B:K.23, B:K.23, B:K.23, B:K.23, B:S.24
- Salt bridges: B:K.23
- pi-Cation interactions: B:R.147, B:R.147
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 3 residues within 4Å:- Chain A: S.24, D.100
- Ligands: ADP.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.100, A:D.100
- Water bridges: A:S.24
NA.4: 4 residues within 4Å:- Chain A: D.19, R.20, E.156
- Ligands: DGP.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.20, A:E.156
- Water bridges: A:R.20
NA.15: 3 residues within 4Å:- Chain B: S.24, D.100
- Ligands: ADP.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.24
- Water bridges: B:S.24
NA.16: 4 residues within 4Å:- Chain B: D.19, R.20, E.156
- Ligands: DGP.13
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.19, B:R.20, B:E.156, B:E.156
- Water bridges: B:R.20
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: T.51, G.52, I.53, E.82
- Chain B: S.66, M.67
Ligand excluded by PLIPGOL.6: 7 residues within 4Å:- Chain A: E.70, L.116, W.120
- Chain B: W.81, Q.126, G.127
- Ligands: GOL.11
Ligand excluded by PLIPGOL.7: 2 residues within 4Å:- Chain A: N.69, L.114
Ligand excluded by PLIPGOL.8: 3 residues within 4Å:- Chain A: A.172, H.173
- Ligands: GOL.12
Ligand excluded by PLIPGOL.9: 4 residues within 4Å:- Chain A: N.48, E.82, H.83, E.86
Ligand excluded by PLIPGOL.10: 4 residues within 4Å:- Chain A: W.96, T.198, I.200, V.202
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain A: E.70, N.115, L.116, N.117
- Ligands: GOL.6
Ligand excluded by PLIPGOL.12: 3 residues within 4Å:- Chain A: N.179, D.181
- Ligands: GOL.8
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain A: S.66, M.67
- Chain B: T.51, G.52, I.53, E.82
Ligand excluded by PLIPGOL.18: 7 residues within 4Å:- Chain A: W.81, Q.126, G.127
- Chain B: E.70, L.116, W.120
- Ligands: GOL.23
Ligand excluded by PLIPGOL.19: 2 residues within 4Å:- Chain B: N.69, L.114
Ligand excluded by PLIPGOL.20: 3 residues within 4Å:- Chain B: A.172, H.173
- Ligands: GOL.24
Ligand excluded by PLIPGOL.21: 4 residues within 4Å:- Chain B: N.48, E.82, H.83, E.86
Ligand excluded by PLIPGOL.22: 4 residues within 4Å:- Chain B: W.96, T.198, I.200, V.202
Ligand excluded by PLIPGOL.23: 5 residues within 4Å:- Chain B: E.70, N.115, L.116, N.117
- Ligands: GOL.18
Ligand excluded by PLIPGOL.24: 3 residues within 4Å:- Chain B: N.179, D.181
- Ligands: GOL.20
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Whittingham, J.L. et al., Structural Basis for the Efficient Phosphorylation of Aztmp and Dgmp by Plasmodium Falciparum Type I Thymidylate Kinase. Biochem.J. (2010)
- Release Date
- 2010-04-21
- Peptides
- THYMIDILATE KINASE, PUTATIVE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DGP: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Whittingham, J.L. et al., Structural Basis for the Efficient Phosphorylation of Aztmp and Dgmp by Plasmodium Falciparum Type I Thymidylate Kinase. Biochem.J. (2010)
- Release Date
- 2010-04-21
- Peptides
- THYMIDILATE KINASE, PUTATIVE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A