- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DGP: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 13 residues within 4Å:- Chain A: R.20, S.21, G.22, K.23, S.24, T.25, D.100, R.147, R.184, I.186, I.189
- Ligands: NA.3, GOL.9
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:R.20, A:G.22, A:K.23, A:S.24, A:S.24, A:T.25, A:T.25, A:D.100, A:R.147, A:R.184
- Water bridges: A:K.23, A:K.23, A:K.23, A:K.23, A:I.186
- Salt bridges: A:K.23
- pi-Cation interactions: A:R.147, A:R.147
ADP.12: 11 residues within 4Å:- Chain B: R.20, S.21, G.22, K.23, S.24, T.25, R.147, R.184, I.186, I.189
- Ligands: NA.13
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:R.20, B:S.21, B:G.22, B:K.23, B:S.24, B:T.25, B:R.147, B:R.147, B:R.184
- Water bridges: B:K.23, B:K.23, B:S.148, B:S.148
- Salt bridges: B:K.23
- pi-Cation interactions: B:R.147, B:R.147
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 3 residues within 4Å:- Chain A: S.24, D.100
- Ligands: ADP.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.24, A:D.100
- Water bridges: A:S.24
NA.4: 3 residues within 4Å:- Chain A: D.19, E.156
- Ligands: DGP.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.19, A:E.156
- Water bridges: A:D.19, A:R.20, A:E.153
NA.13: 4 residues within 4Å:- Chain B: S.24, D.100
- Ligands: DGP.11, ADP.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.100
NA.14: 3 residues within 4Å:- Chain B: D.19, E.156
- Ligands: DGP.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.153
- Water bridges: B:R.20
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 7 residues within 4Å:- Chain A: E.70, L.116, N.117, W.120
- Chain B: W.81, Q.126, G.127
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:E.70, A:N.117, B:Q.126
- Water bridges: A:E.70, A:E.70
GOL.6: 2 residues within 4Å:- Chain A: E.40, K.93
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.40, A:K.93
GOL.7: 5 residues within 4Å:- Chain A: T.51, G.52, I.53, E.82
- Chain B: S.66
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.51, A:G.52, A:I.53, A:E.82, B:S.66
GOL.8: 2 residues within 4Å:- Chain A: K.93, I.95
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.93
GOL.9: 2 residues within 4Å:- Chain A: I.186
- Ligands: ADP.2
No protein-ligand interaction detected (PLIP)GOL.10: 5 residues within 4Å:- Chain A: N.48, T.51, E.82, H.83, E.86
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.48
- Water bridges: A:N.48, A:E.86
GOL.15: 7 residues within 4Å:- Chain A: W.81, Q.126, G.127
- Chain B: E.70, L.116, N.117, W.120
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.70, B:N.117, A:Q.126
- Water bridges: B:E.70, B:E.70
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Whittingham, J.L. et al., Structural Basis for the Efficient Phosphorylation of Aztmp and Dgmp by Plasmodium Falciparum Type I Thymidylate Kinase. Biochem.J. (2010)
- Release Date
- 2010-04-21
- Peptides
- THYMIDILATE KINASE, PUTATIVE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DGP: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Whittingham, J.L. et al., Structural Basis for the Efficient Phosphorylation of Aztmp and Dgmp by Plasmodium Falciparum Type I Thymidylate Kinase. Biochem.J. (2010)
- Release Date
- 2010-04-21
- Peptides
- THYMIDILATE KINASE, PUTATIVE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C